miRNA display CGI


Results 61 - 80 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 158318 0.69 1
Target:  5'- --uGCCUUaggaguuaaagaaUUAAUACCUAGGCUGc-- -3'
miRNA:   3'- aauUGGAA-------------AAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 158224 0.88 0.775286
Target:  5'- cUUAACCcUUUAAUGCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 158115 0.84 0.916403
Target:  5'- uUUAACCcUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 157838 0.85 0.878833
Target:  5'- uUUAACUUuucaauaUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGA-------AAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 157224 0.96 0.427472
Target:  5'- aUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 157171 0.68 1
Target:  5'- aUGcCCUaggaaUUAAUACCUAAGUUAUAUa -3'
miRNA:   3'- aAUuGGAa----AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 157070 0.83 0.934772
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUAUAc -3'
miRNA:   3'- aAUUGGAa----AAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 156902 0.74 0.999855
Target:  5'- cUUAACCcUUUAAUACCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 156783 0.8 0.985858
Target:  5'- uUUAAUCc--UAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 156544 0.95 0.448036
Target:  5'- uUUAcCCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 156426 1.06 0.1407
Target:  5'- aUUAACCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 156335 0.86 0.862891
Target:  5'- cUAACUUUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 155208 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 154913 0.74 0.999809
Target:  5'- --cAUCUUUUAACAUCcAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 154566 0.73 0.999977
Target:  5'- uUUAugUUUUUGAUuuuuaacccuuuACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUugGAAAAUUG------------UGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 153028 0.77 0.998397
Target:  5'- uUUAACUUUUaAACAUUUAAGCUAUGUa -3'
miRNA:   3'- -AAUUGGAAAaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 151283 0.85 0.871407
Target:  5'- gUUAAUCU--UAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 151173 0.81 0.973264
Target:  5'- -aAGCCUUaggaauuaaagggUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- aaUUGGAA-------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 149799 0.75 0.999471
Target:  5'- -----aUUUUAACACCUAAGUUAUGUa -3'
miRNA:   3'- aauuggAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 149195 0.88 0.764549
Target:  5'- gUUAAUUUUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.