miRNA display CGI


Results 81 - 100 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 148749 0.77 0.99804
Target:  5'- uUUAuCC-UUUAACACUUAAGCUAUAUg -3'
miRNA:   3'- -AAUuGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 148614 0.66 1
Target:  5'- uUUAACCcUUUAAUACCUAuaUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 148236 0.77 0.997123
Target:  5'- aUUAAUCUUUUAACAUUUAAGCUuAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGA-UAUA- -5'
28269 3' -40.6 NC_005902.1 + 147753 0.7 0.999999
Target:  5'- --uACU--UUAACAUCUAAGCUAUAa -3'
miRNA:   3'- aauUGGaaAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 147586 0.83 0.928961
Target:  5'- aUUAAUCcugUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 146731 0.83 0.934772
Target:  5'- gUAuCCU-UUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUuGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 146586 0.7 0.999999
Target:  5'- gUAuCCaUUcUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aAUuGG-AAaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 146422 0.87 0.796247
Target:  5'- aUUAAUCcUUUAACACCUAAGCUAUAa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 145941 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 145048 0.79 0.993206
Target:  5'- ------cUUUAGCACCUAAGCUAUAUg -3'
miRNA:   3'- aauuggaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 144980 0.69 1
Target:  5'- uUUAAUCcUUUAAUACUaAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 144144 0.7 1
Target:  5'- gUUAACUcUUUAAUACCUAAuCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143772 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143645 0.77 0.997618
Target:  5'- -------aUUGACACCUAAGCUAUAUa -3'
miRNA:   3'- aauuggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143641 0.84 0.916403
Target:  5'- --uACCUUUUAACAUCUAAGUUAUAa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 143014 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 142153 0.84 0.922837
Target:  5'- --cACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 142143 0.72 0.999992
Target:  5'- gUUAACUUUUUAAcCAUCUAuuuaAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUU-GUGGAU----UCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 141990 0.78 0.994217
Target:  5'- gUUAACUcUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 140913 0.8 0.983845
Target:  5'- aUGGCUUaaucaUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAaa---AUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.