miRNA display CGI


Results 101 - 120 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 140870 0.72 0.999989
Target:  5'- ------cUUUAACAUCUAAGCUGUAUa -3'
miRNA:   3'- aauuggaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 140683 0.73 0.99994
Target:  5'- -cAACuCUUUUAACAUCcAAGCUAUAa -3'
miRNA:   3'- aaUUG-GAAAAUUGUGGaUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 140051 0.7 0.999999
Target:  5'- --cAUCaUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 139683 0.73 0.999938
Target:  5'- cUAAUUUUuaaagagUUAAUACCUAGGCUAUAUa -3'
miRNA:   3'- aAUUGGAA-------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 138763 0.7 1
Target:  5'- uUUAAUCUcaacacaAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaa----UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137892 0.72 0.999989
Target:  5'- gUUAAagggUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137769 0.99 0.308596
Target:  5'- uUUAACUUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137750 0.81 0.970391
Target:  5'- --uACCcUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137562 0.66 1
Target:  5'- uUUAACCUUUUGAauCCUaAAGCUuAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUguGGA-UUCGA-UAUA- -5'
28269 3' -40.6 NC_005902.1 + 137492 0.69 1
Target:  5'- aUUAACCcUUUAAUACCUAAaUUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137432 0.89 0.708836
Target:  5'- --cACCUUUUAACAUCUAAGCUAUAc -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 137427 0.89 0.720203
Target:  5'- uUUAACCUUUUAACACCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 136886 0.74 0.999891
Target:  5'- uUUAACUaUUUAACACCcAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 136564 0.89 0.720203
Target:  5'- cUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 136043 0.8 0.98162
Target:  5'- -aAACCcUUUAACuCCUAAGCUAUAUa -3'
miRNA:   3'- aaUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 135984 0.81 0.979174
Target:  5'- gUUAAUCUUUUAACACCUAAGUa---- -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 135950 0.75 0.999677
Target:  5'- -gGAUCaaagggUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- aaUUGGaa----AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 135887 0.78 0.994217
Target:  5'- gUUAACUcUUUAACAUUUAAGCUAUGUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 135808 0.91 0.63932
Target:  5'- gUUAGCUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 134577 0.75 0.999471
Target:  5'- --uACCcUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.