Results 61 - 80 of 375 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 3' | -40.6 | NC_005902.1 | + | 85336 | 0.89 | 0.731471 |
Target: 5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 169438 | 0.88 | 0.753658 |
Target: 5'- cUUAACCcUUUAACACUUAAGCUGUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 42233 | 0.97 | 0.37861 |
Target: 5'- uUUAACCUcUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 91853 | 0.95 | 0.437685 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 47231 | 0.95 | 0.448036 |
Target: 5'- cUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 108896 | 0.94 | 0.512782 |
Target: 5'- uUUAACCUUUUAACAgCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUgGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 71205 | 0.92 | 0.604291 |
Target: 5'- aUAACCUUUUAAUGCUUAAGCUAUAUa -3' miRNA: 3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 169507 | 0.91 | 0.627635 |
Target: 5'- uUUAACUcUUUAACACCUGAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 163382 | 0.9 | 0.697385 |
Target: 5'- uUUAAcCCUUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 48375 | 0.89 | 0.708836 |
Target: 5'- gUUAACCcUUUAACACCUAAGUUAUGUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 1257 | 0.81 | 0.979174 |
Target: 5'- gUUAACUcUUcAACACCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAaUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 110907 | 0.81 | 0.970391 |
Target: 5'- cUUAACCcUUUuAUACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAuUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 36162 | 0.88 | 0.785857 |
Target: 5'- ---cCCUUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- aauuGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 146422 | 0.87 | 0.796247 |
Target: 5'- aUUAAUCcUUUAACACCUAAGCUAUAa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUa -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 156335 | 0.86 | 0.862891 |
Target: 5'- cUAACUUUUUAACAUUUAAGCUAUAUa -3' miRNA: 3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 157838 | 0.85 | 0.878833 |
Target: 5'- uUUAACUUuucaauaUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGA-------AAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 142153 | 0.84 | 0.922837 |
Target: 5'- --cACUcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 147586 | 0.83 | 0.928961 |
Target: 5'- aUUAAUCcugUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 43521 | 0.83 | 0.940273 |
Target: 5'- aUUAACCUUUUAACAUCUAAcCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 163492 | 0.82 | 0.954493 |
Target: 5'- aUAGCCUUaggauuuaaaggaUUAACAUCUAAGCUAUAa -3' miRNA: 3'- aAUUGGAA-------------AAUUGUGGAUUCGAUAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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