Results 81 - 100 of 375 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 3' | -40.6 | NC_005902.1 | + | 80732 | 0.87 | 0.796247 |
Target: 5'- -aAACUcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aaUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 50042 | 0.86 | 0.835752 |
Target: 5'- --uACCcUUUAACACCUAAGCUAUGUu -3' miRNA: 3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 97435 | 0.85 | 0.871407 |
Target: 5'- --uACCcUUUAACACCUAAGCUAUAc -3' miRNA: 3'- aauUGGaAAAUUGUGGAUUCGAUAUa -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 92003 | 0.85 | 0.895249 |
Target: 5'- uUUAACUUUUUaAAUACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAA-UUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 167155 | 0.83 | 0.928961 |
Target: 5'- ---uCCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aauuGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 43521 | 0.83 | 0.940273 |
Target: 5'- aUUAACCUUUUAACAUCUAAcCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 163492 | 0.82 | 0.954493 |
Target: 5'- aUAGCCUUaggauuuaaaggaUUAACAUCUAAGCUAUAa -3' miRNA: 3'- aAUUGGAA-------------AAUUGUGGAUUCGAUAUa -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 48375 | 0.89 | 0.708836 |
Target: 5'- gUUAACCcUUUAACACCUAAGUUAUGUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 163382 | 0.9 | 0.697385 |
Target: 5'- uUUAAcCCUUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 169507 | 0.91 | 0.627635 |
Target: 5'- uUUAACUcUUUAACACCUGAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 107132 | 0.8 | 0.985858 |
Target: 5'- aUUAACCUUUUAucCACCcucUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUu-GUGG---AUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 54332 | 0.79 | 0.990762 |
Target: 5'- --uGCUUUaaaggaUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aauUGGAA------AAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 23214 | 0.79 | 0.993206 |
Target: 5'- cUAACUUUcUAAUAUCUAAGCUAUAUg -3' miRNA: 3'- aAUUGGAAaAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 184369 | 0.78 | 0.995103 |
Target: 5'- uUUAACCUUUUAACACCc--GUUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGauuCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 143645 | 0.77 | 0.997618 |
Target: 5'- -------aUUGACACCUAAGCUAUAUa -3' miRNA: 3'- aauuggaaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 42233 | 0.97 | 0.37861 |
Target: 5'- uUUAACCUcUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 91853 | 0.95 | 0.437685 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 47231 | 0.95 | 0.448036 |
Target: 5'- cUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 108896 | 0.94 | 0.512782 |
Target: 5'- uUUAACCUUUUAACAgCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUgGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 71205 | 0.92 | 0.604291 |
Target: 5'- aUAACCUUUUAAUGCUUAAGCUAUAUa -3' miRNA: 3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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