miRNA display CGI


Results 101 - 120 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 118421 0.78 0.994217
Target:  5'- uUUAACUUUUUAaagcuuucaACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAU---------UGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 87180 0.77 0.997618
Target:  5'- uUUAACCUUUUAACACUUAuGCaUAUAc -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUuCG-AUAUa -5'
28269 3' -40.6 NC_005902.1 + 83732 0.77 0.998397
Target:  5'- --uACCUUUUAACACUUAAGUgAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50100 0.76 0.999158
Target:  5'- aUUAAcCCUUUgauccUAACACCUAAGCUAc-- -3'
miRNA:   3'- -AAUU-GGAAA-----AUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 162385 0.76 0.99933
Target:  5'- aUUuuCCcUUUAACACCUAAGCUAc-- -3'
miRNA:   3'- -AAuuGGaAAAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 92003 0.85 0.895249
Target:  5'- uUUAACUUUUUaAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAA-UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 97435 0.85 0.871407
Target:  5'- --uACCcUUUAACACCUAAGCUAUAc -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 42233 0.97 0.37861
Target:  5'- uUUAACCUcUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 91853 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 47231 0.95 0.448036
Target:  5'- cUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 108896 0.94 0.512782
Target:  5'- uUUAACCUUUUAACAgCUAGGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUgGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71205 0.92 0.604291
Target:  5'- aUAACCUUUUAAUGCUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 169507 0.91 0.627635
Target:  5'- uUUAACUcUUUAACACCUGAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 163382 0.9 0.697385
Target:  5'- uUUAAcCCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48375 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUGUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 143014 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 54866 0.89 0.742628
Target:  5'- aUUAACCcUUUAACACCUAAGCUAUu- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAua -5'
28269 3' -40.6 NC_005902.1 + 128771 0.88 0.775286
Target:  5'- --uACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 80732 0.87 0.796247
Target:  5'- -aAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aaUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50042 0.86 0.835752
Target:  5'- --uACCcUUUAACACCUAAGCUAUGUu -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.