miRNA display CGI


Results 81 - 100 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 130950 0.72 0.999995
Target:  5'- uUUAAUCcUUUAAUACUUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71307 0.72 0.999995
Target:  5'- --uGCCUUgggaguuaggggUUAACAUCUAAGUUAUAUa -3'
miRNA:   3'- aauUGGAA------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 69370 0.72 0.999995
Target:  5'- --uACCgUUUAACACCUAAaCUAUAUg -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 133616 0.72 0.999992
Target:  5'- uUUAAagggUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 142143 0.72 0.999992
Target:  5'- gUUAACUUUUUAAcCAUCUAuuuaAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUU-GUGGAU----UCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 90591 0.72 0.999992
Target:  5'- --uACCUUaagagUUAagggguaaaACACCUAAGCUGUAUa -3'
miRNA:   3'- aauUGGAA-----AAU---------UGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137892 0.72 0.999989
Target:  5'- gUUAAagggUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67282 0.7 0.999999
Target:  5'- gUUAACCUUUUAACuCCUaAAGCa---- -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGA-UUCGauaua -5'
28269 3' -40.6 NC_005902.1 + 140051 0.7 0.999999
Target:  5'- --cAUCaUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 138763 0.7 1
Target:  5'- uUUAAUCUcaacacaAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaa----UUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 26884 0.68 1
Target:  5'- --uACCUUUU-AUGCCUGGuGCUAUGUg -3'
miRNA:   3'- aauUGGAAAAuUGUGGAUU-CGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67358 0.68 1
Target:  5'- --uACCUUUUAACAaCUAAGUUAg-- -3'
miRNA:   3'- aauUGGAAAAUUGUgGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 116877 0.68 1
Target:  5'- aUUAACCcUUUAAUuCCUAAGaCUAUAc -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUC-GAUAUa -5'
28269 3' -40.6 NC_005902.1 + 20057 0.68 1
Target:  5'- aUUAACCcUUUAACACaUAAGCcAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGgAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 144980 0.69 1
Target:  5'- uUUAAUCcUUUAAUACUaAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 133229 0.69 1
Target:  5'- --cACCUUUUAACACCUGu-UUAUAUu -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 158318 0.69 1
Target:  5'- --uGCCUUaggaguuaaagaaUUAAUACCUAGGCUGc-- -3'
miRNA:   3'- aauUGGAA-------------AAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 177828 0.69 1
Target:  5'- aUUAACUUU-----GCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAaauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 179692 0.7 1
Target:  5'- uUUAuCCUUUaaa-ACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAAauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 140870 0.72 0.999989
Target:  5'- ------cUUUAACAUCUAAGCUGUAUa -3'
miRNA:   3'- aauuggaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.