miRNA display CGI


Results 61 - 80 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 40997 0.71 0.999913
Target:  5'- -cAUAUAGCUUAGGUGcUAAAGa--- -3'
miRNA:   3'- caUAUAUCGAAUCCACaAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 19914 0.71 0.999885
Target:  5'- uGUAUAUAGCUUAaGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 39451 0.71 0.999913
Target:  5'- aGUAUAUAGCUUAGaUGUUAGAauGGAu -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUc-CCUc -5'
28269 5' -43.2 NC_005902.1 + 114843 0.72 0.999746
Target:  5'- uGUAUAUAGCUUAaGUGUuaaaaagguUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACA---------AUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 130971 0.72 0.999746
Target:  5'- uUAUAUAcaagugaaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUc-------GAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 136282 0.72 0.999476
Target:  5'- aUAUAUAGUUUAGGUGUUGAGauGAa -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUccCUc -5'
28269 5' -43.2 NC_005902.1 + 85940 0.72 0.999586
Target:  5'- -aAUAUAGCUUAGGUGUUAAu----- -3'
miRNA:   3'- caUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 107830 0.72 0.999746
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 5216 0.72 0.999674
Target:  5'- aGUAUAUcGCUUAGGUGUU--AGGuAGa -3'
miRNA:   3'- -CAUAUAuCGAAUCCACAAuuUCCcUC- -5'
28269 5' -43.2 NC_005902.1 + 100020 0.72 0.999586
Target:  5'- -aAUAUAGCUUAGGUGUUAAu----- -3'
miRNA:   3'- caUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 69098 0.72 0.999746
Target:  5'- uUAUAUAaCcUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUcGaAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 55158 0.72 0.999476
Target:  5'- uGUAUAUAGCUUGaGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 114290 0.72 0.999476
Target:  5'- aGUAUGUAGUgUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGaAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 12863 0.72 0.999586
Target:  5'- uGUAUAUAaCUUAGGaGUUAAGGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 16600 0.72 0.999586
Target:  5'- aUAUAcAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUaUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 97749 0.72 0.999586
Target:  5'- -cAUAUAGCUUAGGUGUUAAu----- -3'
miRNA:   3'- caUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 37290 0.73 0.998987
Target:  5'- -cAUAUAGCUUAaGUGUUAAAGGa-- -3'
miRNA:   3'- caUAUAUCGAAUcCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 22655 0.73 0.999343
Target:  5'- aUAUAUAGCUUAGaUGUUaAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCcACAA-UUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 165757 0.73 0.998987
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUc---GAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 149879 0.73 0.999343
Target:  5'- aUAUAUAGCUUAGaUGUUaAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCcACAA-UUUCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.