miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 1178 0.87 0.658192
Target:  5'- aUAUAUacAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUA--UCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 1294 0.69 0.999991
Target:  5'- aUAUAUAGCUcAGGUGUUA---GGAu -3'
miRNA:   3'- cAUAUAUCGAaUCCACAAUuucCCUc -5'
28269 5' -43.2 NC_005902.1 + 1452 0.7 0.999965
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc--- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 3109 0.77 0.983524
Target:  5'- aUAUAUAGCUUAGGUGUUAAAa---- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 3478 0.84 0.825961
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaucGAGu -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcc-CUC- -5'
28269 5' -43.2 NC_005902.1 + 4815 0.66 1
Target:  5'- aGUAUAUAaCUUAGGaGUUAAAGGc-- -3'
miRNA:   3'- -CAUAUAUcGAAUCCaCAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 5159 0.69 0.999995
Target:  5'- -gAUAUuGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- caUAUAuCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 5216 0.72 0.999674
Target:  5'- aGUAUAUcGCUUAGGUGUU--AGGuAGa -3'
miRNA:   3'- -CAUAUAuCGAAUCCACAAuuUCCcUC- -5'
28269 5' -43.2 NC_005902.1 + 5422 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 5691 0.75 0.993797
Target:  5'- uGUAUAUAGCUUAGGgGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 6230 0.85 0.756454
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 6346 0.77 0.985491
Target:  5'- aUAUAUAGCUUAGGUuUUAAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCCAcAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 8456 0.68 0.999999
Target:  5'- ---aAUAGUUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- cauaUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 11449 0.8 0.946922
Target:  5'- cGUAUAUAGCUUAGGUGUUAAcucGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUuc-CCuc -5'
28269 5' -43.2 NC_005902.1 + 12863 0.72 0.999586
Target:  5'- uGUAUAUAaCUUAGGaGUUAAGGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 13226 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 13436 0.85 0.745902
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 15192 0.78 0.976411
Target:  5'- uGUAUAUAGCUUAcaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUccACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 15341 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 15510 0.76 0.990327
Target:  5'- aUAUAUAGUUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUcCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.