miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 182665 0.68 0.999999
Target:  5'- aUGUAUAGCUUAGGUGUa-------- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAauuucccuc -5'
28269 5' -43.2 NC_005902.1 + 145373 0.68 0.999999
Target:  5'- aUAUAUAGCUUAaacGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUccaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 124519 0.68 0.999999
Target:  5'- aUAUAUAGCUUAaGUaUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUcCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 63275 0.68 0.999999
Target:  5'- -cAUAUAGCUUAaagGUUAAAGGGu- -3'
miRNA:   3'- caUAUAUCGAAUccaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 22594 0.68 0.999999
Target:  5'- uUAUAUAGcCUUAGGauUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUC-GAAUCCacAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 92331 0.68 0.999999
Target:  5'- cUAUAUAGCUUAGGU---AAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCCAcaaUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 127816 0.68 0.999999
Target:  5'- cUAUAUAGCUUAuGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUcCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 69159 0.68 0.999997
Target:  5'- uUGUAUAGuCUUAGGaaUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUC-GAAUCCacAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 84969 0.68 0.999997
Target:  5'- aUAUAUAGUgUAGaUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGaAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 5159 0.69 0.999995
Target:  5'- -gAUAUuGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- caUAUAuCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 181431 0.69 0.999995
Target:  5'- aGUAUAUcGCUUAGaUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAuCGAAUCcACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 54081 0.69 0.999993
Target:  5'- aUAUAUAGUUUAGGUGUUAAc----- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 1294 0.69 0.999991
Target:  5'- aUAUAUAGCUcAGGUGUUA---GGAu -3'
miRNA:   3'- cAUAUAUCGAaUCCACAAUuucCCUc -5'
28269 5' -43.2 NC_005902.1 + 122676 0.69 0.999991
Target:  5'- aGUGUAUAGCUUAGaGaUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUC-C-ACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 134439 0.69 0.999991
Target:  5'- -----cAGCUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- cauauaUCGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 68110 0.69 0.999987
Target:  5'- -cAUAUAaCUUAGGUGgUAGAGGGu- -3'
miRNA:   3'- caUAUAUcGAAUCCACaAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 175654 0.69 0.999987
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGGu -3'
miRNA:   3'- -CAUAUAUCGAAUcCAcAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 69212 0.69 0.999987
Target:  5'- uGUAUAUAaCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 25161 0.69 0.999987
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAu---- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 149952 0.7 0.999981
Target:  5'- -------cCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cauauaucGAAUCCACAAUUUCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.