miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2827 5' -58.6 NC_001491.2 + 101584 0.66 0.793781
Target:  5'- aCCAcGG-GCAAGCggggagagugUCUGGUGUUGuGGCa -3'
miRNA:   3'- -GGU-CCgCGUUCGa---------GGACCACGAC-CUG- -5'
2827 5' -58.6 NC_001491.2 + 135226 0.66 0.775523
Target:  5'- uCCGGGUGCAGGCaggCCaUGGcUGUcGGGu -3'
miRNA:   3'- -GGUCCGCGUUCGa--GG-ACC-ACGaCCUg -5'
2827 5' -58.6 NC_001491.2 + 101033 0.66 0.7662
Target:  5'- aCCGGGaauaGCGGGCUUUUGGaucaGCUccgGGACc -3'
miRNA:   3'- -GGUCCg---CGUUCGAGGACCa---CGA---CCUG- -5'
2827 5' -58.6 NC_001491.2 + 115710 0.66 0.7662
Target:  5'- cCCGGGCcacCAGGCUCCccGG-GCccugGGACc -3'
miRNA:   3'- -GGUCCGc--GUUCGAGGa-CCaCGa---CCUG- -5'
2827 5' -58.6 NC_001491.2 + 148362 0.66 0.76338
Target:  5'- aCAGGCGCGcgaacgcggccucGGCccucgcgaacagUCCgggcccgaagagGGUGCUGGAg -3'
miRNA:   3'- gGUCCGCGU-------------UCG------------AGGa-----------CCACGACCUg -5'
2827 5' -58.6 NC_001491.2 + 6295 0.67 0.727825
Target:  5'- aCCAGuuGCu-GCUCCacGGUGCUGG-Cu -3'
miRNA:   3'- -GGUCcgCGuuCGAGGa-CCACGACCuG- -5'
2827 5' -58.6 NC_001491.2 + 116524 0.67 0.698156
Target:  5'- cCCgAGGCGCuguGCUCCaacccGGccggGCUGGAg -3'
miRNA:   3'- -GG-UCCGCGuu-CGAGGa----CCa---CGACCUg -5'
2827 5' -58.6 NC_001491.2 + 1659 0.68 0.658888
Target:  5'- gCAGGCuCGAGCUUCUGGacgagccuagcgaagGCaUGGACc -3'
miRNA:   3'- gGUCCGcGUUCGAGGACCa--------------CG-ACCUG- -5'
2827 5' -58.6 NC_001491.2 + 118235 0.68 0.657875
Target:  5'- gCCGGGCcaCGGGCUCCUcaucacccggcGGUGg-GGACg -3'
miRNA:   3'- -GGUCCGc-GUUCGAGGA-----------CCACgaCCUG- -5'
2827 5' -58.6 NC_001491.2 + 79394 0.69 0.61625
Target:  5'- uCCAGGCGCAGGUUugcguugCCUGGcgaagaaGUUGGuCg -3'
miRNA:   3'- -GGUCCGCGUUCGA-------GGACCa------CGACCuG- -5'
2827 5' -58.6 NC_001491.2 + 58821 0.69 0.606107
Target:  5'- gCCAGGUgcugcguGCGGGCUCCcaaaGcGUGCaGGACu -3'
miRNA:   3'- -GGUCCG-------CGUUCGAGGa---C-CACGaCCUG- -5'
2827 5' -58.6 NC_001491.2 + 148012 0.69 0.596995
Target:  5'- cCCAGGCGUggGaccgCUUGGUGa-GGAUg -3'
miRNA:   3'- -GGUCCGCGuuCga--GGACCACgaCCUG- -5'
2827 5' -58.6 NC_001491.2 + 88989 0.7 0.566798
Target:  5'- uUCGGGCuGCAAuGUUUgguagGGUGCUGGGCa -3'
miRNA:   3'- -GGUCCG-CGUU-CGAGga---CCACGACCUG- -5'
2827 5' -58.6 NC_001491.2 + 109114 0.7 0.546881
Target:  5'- uCCAGGCucacaaauauGaCAAGCUUCcGGUGCUGGu- -3'
miRNA:   3'- -GGUCCG----------C-GUUCGAGGaCCACGACCug -5'
2827 5' -58.6 NC_001491.2 + 114468 0.7 0.546881
Target:  5'- gCCgAGGC-CGAGCcCCUGGUGCUGc-- -3'
miRNA:   3'- -GG-UCCGcGUUCGaGGACCACGACcug -5'
2827 5' -58.6 NC_001491.2 + 32586 0.7 0.517447
Target:  5'- cCCGGGCGCAA--UCCgcaGGaGUUGGACg -3'
miRNA:   3'- -GGUCCGCGUUcgAGGa--CCaCGACCUG- -5'
2827 5' -58.6 NC_001491.2 + 94970 0.71 0.506811
Target:  5'- aCAGGCGacgaaaAGGCUCCccagccaUGGUGUaguccgUGGACg -3'
miRNA:   3'- gGUCCGCg-----UUCGAGG-------ACCACG------ACCUG- -5'
2827 5' -58.6 NC_001491.2 + 89591 0.71 0.495316
Target:  5'- cCCAGGCuugcgcgcuccgcaGCGAGCguccUCUGGUGCUuuucuuggggcgGGACa -3'
miRNA:   3'- -GGUCCG--------------CGUUCGa---GGACCACGA------------CCUG- -5'
2827 5' -58.6 NC_001491.2 + 49974 0.72 0.442465
Target:  5'- gCCAGGgauguuuuuuCGCuGGcCUCCcaGGUGCUGGACu -3'
miRNA:   3'- -GGUCC----------GCGuUC-GAGGa-CCACGACCUG- -5'
2827 5' -58.6 NC_001491.2 + 115062 1.11 0.000991
Target:  5'- gCCAGGCGCAAGCUCCUGGUGCUGGACg -3'
miRNA:   3'- -GGUCCGCGUUCGAGGACCACGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.