Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2827 | 5' | -58.6 | NC_001491.2 | + | 101584 | 0.66 | 0.793781 |
Target: 5'- aCCAcGG-GCAAGCggggagagugUCUGGUGUUGuGGCa -3' miRNA: 3'- -GGU-CCgCGUUCGa---------GGACCACGAC-CUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 148012 | 0.69 | 0.596995 |
Target: 5'- cCCAGGCGUggGaccgCUUGGUGa-GGAUg -3' miRNA: 3'- -GGUCCGCGuuCga--GGACCACgaCCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 88989 | 0.7 | 0.566798 |
Target: 5'- uUCGGGCuGCAAuGUUUgguagGGUGCUGGGCa -3' miRNA: 3'- -GGUCCG-CGUU-CGAGga---CCACGACCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 109114 | 0.7 | 0.546881 |
Target: 5'- uCCAGGCucacaaauauGaCAAGCUUCcGGUGCUGGu- -3' miRNA: 3'- -GGUCCG----------C-GUUCGAGGaCCACGACCug -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 114468 | 0.7 | 0.546881 |
Target: 5'- gCCgAGGC-CGAGCcCCUGGUGCUGc-- -3' miRNA: 3'- -GG-UCCGcGUUCGaGGACCACGACcug -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 32586 | 0.7 | 0.517447 |
Target: 5'- cCCGGGCGCAA--UCCgcaGGaGUUGGACg -3' miRNA: 3'- -GGUCCGCGUUcgAGGa--CCaCGACCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 94970 | 0.71 | 0.506811 |
Target: 5'- aCAGGCGacgaaaAGGCUCCccagccaUGGUGUaguccgUGGACg -3' miRNA: 3'- gGUCCGCg-----UUCGAGG-------ACCACG------ACCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 89591 | 0.71 | 0.495316 |
Target: 5'- cCCAGGCuugcgcgcuccgcaGCGAGCguccUCUGGUGCUuuucuuggggcgGGACa -3' miRNA: 3'- -GGUCCG--------------CGUUCGa---GGACCACGA------------CCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 49974 | 0.72 | 0.442465 |
Target: 5'- gCCAGGgauguuuuuuCGCuGGcCUCCcaGGUGCUGGACu -3' miRNA: 3'- -GGUCC----------GCGuUC-GAGGa-CCACGACCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 58821 | 0.69 | 0.606107 |
Target: 5'- gCCAGGUgcugcguGCGGGCUCCcaaaGcGUGCaGGACu -3' miRNA: 3'- -GGUCCG-------CGUUCGAGGa---C-CACGaCCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 79394 | 0.69 | 0.61625 |
Target: 5'- uCCAGGCGCAGGUUugcguugCCUGGcgaagaaGUUGGuCg -3' miRNA: 3'- -GGUCCGCGUUCGA-------GGACCa------CGACCuG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 135226 | 0.66 | 0.775523 |
Target: 5'- uCCGGGUGCAGGCaggCCaUGGcUGUcGGGu -3' miRNA: 3'- -GGUCCGCGUUCGa--GG-ACC-ACGaCCUg -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 101033 | 0.66 | 0.7662 |
Target: 5'- aCCGGGaauaGCGGGCUUUUGGaucaGCUccgGGACc -3' miRNA: 3'- -GGUCCg---CGUUCGAGGACCa---CGA---CCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 115710 | 0.66 | 0.7662 |
Target: 5'- cCCGGGCcacCAGGCUCCccGG-GCccugGGACc -3' miRNA: 3'- -GGUCCGc--GUUCGAGGa-CCaCGa---CCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 148362 | 0.66 | 0.76338 |
Target: 5'- aCAGGCGCGcgaacgcggccucGGCccucgcgaacagUCCgggcccgaagagGGUGCUGGAg -3' miRNA: 3'- gGUCCGCGU-------------UCG------------AGGa-----------CCACGACCUg -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 6295 | 0.67 | 0.727825 |
Target: 5'- aCCAGuuGCu-GCUCCacGGUGCUGG-Cu -3' miRNA: 3'- -GGUCcgCGuuCGAGGa-CCACGACCuG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 116524 | 0.67 | 0.698156 |
Target: 5'- cCCgAGGCGCuguGCUCCaacccGGccggGCUGGAg -3' miRNA: 3'- -GG-UCCGCGuu-CGAGGa----CCa---CGACCUg -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 1659 | 0.68 | 0.658888 |
Target: 5'- gCAGGCuCGAGCUUCUGGacgagccuagcgaagGCaUGGACc -3' miRNA: 3'- gGUCCGcGUUCGAGGACCa--------------CG-ACCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 118235 | 0.68 | 0.657875 |
Target: 5'- gCCGGGCcaCGGGCUCCUcaucacccggcGGUGg-GGACg -3' miRNA: 3'- -GGUCCGc-GUUCGAGGA-----------CCACgaCCUG- -5' |
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2827 | 5' | -58.6 | NC_001491.2 | + | 115062 | 1.11 | 0.000991 |
Target: 5'- gCCAGGCGCAAGCUCCUGGUGCUGGACg -3' miRNA: 3'- -GGUCCGCGUUCGAGGACCACGACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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