Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28270 | 5' | -44.1 | NC_005902.1 | + | 117038 | 0.75 | 0.988648 |
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Target: 5'- gCAAAUAGGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 85758 | 0.75 | 0.983204 |
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Target: 5'- gCAAAUAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 158170 | 0.76 | 0.973139 |
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Target: 5'- gCAAACAAGUaUAAGCCUUaagauuuaaAGGGUUa- -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAA---------UCCCAAau -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 136447 | 0.76 | 0.973139 |
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Target: 5'- gUAAACAAGUaUAAGCCUUAGuGUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCcCAAAU- -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 1518 | 0.78 | 0.955189 |
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Target: 5'- aUAAACAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 46291 | 0.8 | 0.905543 |
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Target: 5'- uCAAACAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 137589 | 0.86 | 0.633648 |
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Target: 5'- aUAAACAAGUaUAAGCCUUAGGGUg-- -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCCAaau -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 168395 | 0.91 | 0.392111 |
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Target: 5'- aCAAAUAAGUaUAAGCCUUAGGGUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCCAAAU- -5' |
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| 28270 | 5' | -44.1 | NC_005902.1 | + | 15396 | 1.08 | 0.047789 |
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Target: 5'- gCAAACAAGUGUAAGCCUUAGGGUUUAa -3' miRNA: 3'- -GUUUGUUCACAUUCGGAAUCCCAAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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