miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 94951 0.79 0.920594
Target:  5'- aCCCUUUAACuccaCACAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 94764 0.69 0.999961
Target:  5'- cCCCUUUAcuucACAUUGUuauugaugauacaaaGCAUCAUUAAUg -3'
miRNA:   3'- -GGGAAAU----UGUGACG---------------UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 91308 0.66 1
Target:  5'- aCCUUUUAACACUuaaacuauauacGCAC-UCAUUuguACAu -3'
miRNA:   3'- -GGGAAAUUGUGA------------CGUGuAGUAGu--UGU- -5'
28271 3' -44.5 NC_005902.1 + 90489 0.71 0.999528
Target:  5'- aCCCUUUAACuCUuaagGCAUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 90126 0.66 1
Target:  5'- aCCCUUUAAUuCUaUAuCGUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 89961 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 88893 0.78 0.955972
Target:  5'- aUCCUUUAACua--CACAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 87184 0.66 1
Target:  5'- aCCUUUUAACACuuaUGCAUAUaCAaacaagagCAGCAa -3'
miRNA:   3'- -GGGAAAUUGUG---ACGUGUA-GUa-------GUUGU- -5'
28271 3' -44.5 NC_005902.1 + 87062 0.66 0.999999
Target:  5'- cCCCUUaacuucuaaGGCAUUGUuaaugauacuuuGCAUCAUUAACAa -3'
miRNA:   3'- -GGGAAa--------UUGUGACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 86340 0.68 0.999988
Target:  5'- aUCCUUUAAUucCUaagGCGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 85553 0.68 0.999988
Target:  5'- aCCCUUUAAUuccaaaCACAUCAcCAACAa -3'
miRNA:   3'- -GGGAAAUUGugac--GUGUAGUaGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 85402 0.69 0.999921
Target:  5'- aCCCUUUAACuaauuuaUGU-CAUCAUUGACAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 84065 0.84 0.741276
Target:  5'- aUCCUUUAACuCUGCACuAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 81927 0.75 0.990013
Target:  5'- aCCCUUUAACuCcGCaACAUCAUUAAUAc -3'
miRNA:   3'- -GGGAAAUUGuGaCG-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 81354 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCAcCAUUAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 78757 0.72 0.999089
Target:  5'- aCgCUUUAACcCUGCAUuGUUAUCAACAa -3'
miRNA:   3'- -GgGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 78151 0.74 0.9939
Target:  5'- aUCCUUUAacuuuACACUGUcaucaacaacgcuuaGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAU-----UGUGACG---------------UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 75833 0.73 0.997995
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 74841 0.66 0.999999
Target:  5'- uUCCUUaucACAacaaUGUaaaGCGUCAUCAACAa -3'
miRNA:   3'- -GGGAAau-UGUg---ACG---UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 71259 0.68 0.999988
Target:  5'- aCCCUUUAACuCU--ACAUCGUCAcCGa -3'
miRNA:   3'- -GGGAAAUUGuGAcgUGUAGUAGUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.