miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 1555 0.73 0.995961
Target:  5'- aCCCUUUAACuu--CACAUCAUCAuCAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 127845 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 36096 0.76 0.977212
Target:  5'- aCCCUUUAACACcuaaggUGUgguugaugacauaaaGCAUCAUUAACAa -3'
miRNA:   3'- -GGGAAAUUGUG------ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 170070 0.77 0.970391
Target:  5'- aUCCUUUAACuc--CACAUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 137493 0.78 0.95173
Target:  5'- aCUCUUUAACuCUaUACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 94951 0.79 0.920594
Target:  5'- aCCCUUUAACuccaCACAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 10060 0.87 0.578261
Target:  5'- aCCCUUUAACuCUGCGCuGUUAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 131007 0.73 0.997124
Target:  5'- aCCCUUUAAUuccaUGC-UGUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 75833 0.73 0.997995
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 118575 0.7 0.99977
Target:  5'- aCCCUUUAACuuCUaagGCAUCAUUGACAg -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 95529 0.71 0.999528
Target:  5'- aCCCUUUAACuc--CACAUCGUCAuCGa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 180325 0.71 0.999408
Target:  5'- aCCUUUUAACACUGUACuagUGUUAAUu -3'
miRNA:   3'- -GGGAAAUUGUGACGUGua-GUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 170202 0.72 0.999089
Target:  5'- aCCCUUUAACua--CACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 127677 0.72 0.999089
Target:  5'- aCCCUUUAACuccauGCGUCAUCAAUAc -3'
miRNA:   3'- -GGGAAAUUGugacgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 173197 0.72 0.998632
Target:  5'- aUCCUUUAACuc--CACAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 102205 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 89961 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 140992 0.72 0.998339
Target:  5'- aCCCUUUAACuccaCACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 160950 0.73 0.997995
Target:  5'- aCCCUUUAACucuaUGU--AUCGUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGugUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 10982 1.14 0.025029
Target:  5'- aCCCUUUAACACUGCACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGUGACGUGUAGUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.