miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 5' -39.6 NC_005902.1 + 69283 0.68 1
Target:  5'- ------aAUGAUGUuuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 71295 0.69 1
Target:  5'- uAUUAUcaAUGAUGCcuuggGAGUUAGGGGu -3'
miRNA:   3'- -UAAUAacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 135509 0.71 1
Target:  5'- -gUAUUGcUG-UGCAUggaaGAGUUAAAGGg -3'
miRNA:   3'- uaAUAACuACuACGUA----CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 38487 0.71 1
Target:  5'- cAUUGUUGAUGAUGUAUuaaaAGUUAAGa- -3'
miRNA:   3'- -UAAUAACUACUACGUAc---UCAAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 159717 0.71 1
Target:  5'- --cAUUGAUGAUGCcuuagGAGUUAAu-- -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUucc -5'
28271 5' -39.6 NC_005902.1 + 146227 0.7 1
Target:  5'- ---uUUGAUGAUGUGgaaGAGgaAGAGGa -3'
miRNA:   3'- uaauAACUACUACGUa--CUCaaUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 169238 0.7 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAAGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 22481 0.66 1
Target:  5'- ----aUGAUaAUGU-UGAGUUAAAGGu -3'
miRNA:   3'- uaauaACUAcUACGuACUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 159836 0.69 1
Target:  5'- ------aAUGAUGCcuuagGAGUUAAGGGg -3'
miRNA:   3'- uaauaacUACUACGua---CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 133176 0.7 1
Target:  5'- uAUUGUUGAUGAcguuuuaUGuCAUuaacaacgguaugGAGUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACU-------AC-GUA-------------CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 146132 0.7 1
Target:  5'- ----aUGAUGAUGUAguAGUUGAAGa -3'
miRNA:   3'- uaauaACUACUACGUacUCAAUUUCc -5'
28271 5' -39.6 NC_005902.1 + 110287 0.73 0.999999
Target:  5'- --cAUUGAUGGUGCuuuagGAGUUAAGa- -3'
miRNA:   3'- uaaUAACUACUACGua---CUCAAUUUcc -5'
28271 5' -39.6 NC_005902.1 + 153743 0.73 0.999999
Target:  5'- uAUUGUUGAUGAUaUAUGgaggguuuaaagGGUUAAAGGg -3'
miRNA:   3'- -UAAUAACUACUAcGUAC------------UCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 114784 0.73 0.999998
Target:  5'- ----gUGAcGAUGUA-GAGUUAAAGGg -3'
miRNA:   3'- uaauaACUaCUACGUaCUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 45047 0.74 0.999996
Target:  5'- --cAUUGAUaAUGUGUgGAGUUAAAGGg -3'
miRNA:   3'- uaaUAACUAcUACGUA-CUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 104301 0.74 0.999995
Target:  5'- --cAUUGAUGAcgGUGUGAGgUGGGGGg -3'
miRNA:   3'- uaaUAACUACUa-CGUACUCaAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 79965 0.74 0.999995
Target:  5'- --cGUUGAUGAcaGUGUGAaGUUAAAGGa -3'
miRNA:   3'- uaaUAACUACUa-CGUACU-CAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 107884 0.74 0.999995
Target:  5'- cGUUGUUGAUGAcagUGUAa-AGUUAAAGGa -3'
miRNA:   3'- -UAAUAACUACU---ACGUacUCAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 100483 0.74 0.999995
Target:  5'- uUUGUUGGUGAUGUGUuugGAaUUAAAGGg -3'
miRNA:   3'- uAAUAACUACUACGUA---CUcAAUUUCC- -5'
28271 5' -39.6 NC_005902.1 + 131150 0.74 0.999993
Target:  5'- --cAUUGAUGAUGCuuuguguUGAGUauauagcuuagguguUAAAGGg -3'
miRNA:   3'- uaaUAACUACUACGu------ACUCA---------------AUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.