miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28272 3' -40.2 NC_005902.1 + 155130 0.66 1
Target:  5'- ----uUGAAU-GAAGUCUAUGAUGAUc -3'
miRNA:   3'- auucuAUUUAcCUUCAGAUAUUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 6068 0.68 1
Target:  5'- uUAAaAUGAAUaGGaAAGUCUAUAAgGACu -3'
miRNA:   3'- -AUUcUAUUUA-CC-UUCAGAUAUUgCUG- -5'
28272 3' -40.2 NC_005902.1 + 74691 0.68 1
Target:  5'- gUAAGA--AAUGGAugaAGUCUAU-AUGACc -3'
miRNA:   3'- -AUUCUauUUACCU---UCAGAUAuUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 95271 0.66 1
Target:  5'- aAAGAUA--UGGAA-UUUAUAugGACu -3'
miRNA:   3'- aUUCUAUuuACCUUcAGAUAUugCUG- -5'
28272 3' -40.2 NC_005902.1 + 77024 0.68 1
Target:  5'- ---aAUGAAUGGAGGUCUAUAu---- -3'
miRNA:   3'- auucUAUUUACCUUCAGAUAUugcug -5'
28272 3' -40.2 NC_005902.1 + 105066 0.68 1
Target:  5'- gUAAGAUAAAU-GAAGUCUAU-GUGACc -3'
miRNA:   3'- -AUUCUAUUUAcCUUCAGAUAuUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 48314 0.71 1
Target:  5'- aUAAGAagUGAAUaGAAGUCUAUAACaACu -3'
miRNA:   3'- -AUUCU--AUUUAcCUUCAGAUAUUGcUG- -5'
28272 3' -40.2 NC_005902.1 + 137686 0.74 0.999982
Target:  5'- uUAAGAUAAAcaGAAGUCUAUAACaACu -3'
miRNA:   3'- -AUUCUAUUUacCUUCAGAUAUUGcUG- -5'
28272 3' -40.2 NC_005902.1 + 108988 0.77 0.999573
Target:  5'- ----uUGAAU-GAAGUCUAUAACGACa -3'
miRNA:   3'- auucuAUUUAcCUUCAGAUAUUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 79430 0.78 0.99869
Target:  5'- cGGGAUAAAU-GAAGUCUAUAGUGACc -3'
miRNA:   3'- aUUCUAUUUAcCUUCAGAUAUUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 18437 0.8 0.992229
Target:  5'- uUAAGAUGAAUGGAAaUCUAUGGCaACu -3'
miRNA:   3'- -AUUCUAUUUACCUUcAGAUAUUGcUG- -5'
28272 3' -40.2 NC_005902.1 + 30878 0.87 0.891952
Target:  5'- uUAAaAUGAAUGGAAGUCUAUGAUGAUc -3'
miRNA:   3'- -AUUcUAUUUACCUUCAGAUAUUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 181309 0.99 0.382327
Target:  5'- cAAGAaaUAAAUGGAAGUCUGUGGCGACu -3'
miRNA:   3'- aUUCU--AUUUACCUUCAGAUAUUGCUG- -5'
28272 3' -40.2 NC_005902.1 + 4692 1.11 0.102038
Target:  5'- uUAAGAUAAAUGGAAGUCUAUAACGACu -3'
miRNA:   3'- -AUUCUAUUUACCUUCAGAUAUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.