Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28272 | 3' | -40.2 | NC_005902.1 | + | 155130 | 0.66 | 1 |
Target: 5'- ----uUGAAU-GAAGUCUAUGAUGAUc -3' miRNA: 3'- auucuAUUUAcCUUCAGAUAUUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 6068 | 0.68 | 1 |
Target: 5'- uUAAaAUGAAUaGGaAAGUCUAUAAgGACu -3' miRNA: 3'- -AUUcUAUUUA-CC-UUCAGAUAUUgCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 74691 | 0.68 | 1 |
Target: 5'- gUAAGA--AAUGGAugaAGUCUAU-AUGACc -3' miRNA: 3'- -AUUCUauUUACCU---UCAGAUAuUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 95271 | 0.66 | 1 |
Target: 5'- aAAGAUA--UGGAA-UUUAUAugGACu -3' miRNA: 3'- aUUCUAUuuACCUUcAGAUAUugCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 77024 | 0.68 | 1 |
Target: 5'- ---aAUGAAUGGAGGUCUAUAu---- -3' miRNA: 3'- auucUAUUUACCUUCAGAUAUugcug -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 105066 | 0.68 | 1 |
Target: 5'- gUAAGAUAAAU-GAAGUCUAU-GUGACc -3' miRNA: 3'- -AUUCUAUUUAcCUUCAGAUAuUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 48314 | 0.71 | 1 |
Target: 5'- aUAAGAagUGAAUaGAAGUCUAUAACaACu -3' miRNA: 3'- -AUUCU--AUUUAcCUUCAGAUAUUGcUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 137686 | 0.74 | 0.999982 |
Target: 5'- uUAAGAUAAAcaGAAGUCUAUAACaACu -3' miRNA: 3'- -AUUCUAUUUacCUUCAGAUAUUGcUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 108988 | 0.77 | 0.999573 |
Target: 5'- ----uUGAAU-GAAGUCUAUAACGACa -3' miRNA: 3'- auucuAUUUAcCUUCAGAUAUUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 79430 | 0.78 | 0.99869 |
Target: 5'- cGGGAUAAAU-GAAGUCUAUAGUGACc -3' miRNA: 3'- aUUCUAUUUAcCUUCAGAUAUUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 18437 | 0.8 | 0.992229 |
Target: 5'- uUAAGAUGAAUGGAAaUCUAUGGCaACu -3' miRNA: 3'- -AUUCUAUUUACCUUcAGAUAUUGcUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 30878 | 0.87 | 0.891952 |
Target: 5'- uUAAaAUGAAUGGAAGUCUAUGAUGAUc -3' miRNA: 3'- -AUUcUAUUUACCUUCAGAUAUUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 181309 | 0.99 | 0.382327 |
Target: 5'- cAAGAaaUAAAUGGAAGUCUGUGGCGACu -3' miRNA: 3'- aUUCU--AUUUACCUUCAGAUAUUGCUG- -5' |
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28272 | 3' | -40.2 | NC_005902.1 | + | 4692 | 1.11 | 0.102038 |
Target: 5'- uUAAGAUAAAUGGAAGUCUAUAACGACu -3' miRNA: 3'- -AUUCUAUUUACCUUCAGAUAUUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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