miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28272 5' -46.4 NC_005902.1 + 90377 0.66 0.999935
Target:  5'- uUGGUUGCUAUAGACUUCa-------- -3'
miRNA:   3'- -AUCAGCGGUGUCUGAAGguaaauaaa -5'
28272 5' -46.4 NC_005902.1 + 103735 0.66 0.999935
Target:  5'- uUGGUUaCUAUAGACUUUUAUUUAUUg -3'
miRNA:   3'- -AUCAGcGGUGUCUGAAGGUAAAUAAa -5'
28272 5' -46.4 NC_005902.1 + 4659 0.66 0.999935
Target:  5'- --aUUGCUAUAGACUUCUAUUcAUUUu -3'
miRNA:   3'- aucAGCGGUGUCUGAAGGUAAaUAAA- -5'
28272 5' -46.4 NC_005902.1 + 100837 0.68 0.999591
Target:  5'- uUGGUCaCCAUAGACUUCUAg------ -3'
miRNA:   3'- -AUCAGcGGUGUCUGAAGGUaaauaaa -5'
28272 5' -46.4 NC_005902.1 + 74726 0.68 0.999355
Target:  5'- uUGGUUGCUAUAaAUUUCCAUUUGUc- -3'
miRNA:   3'- -AUCAGCGGUGUcUGAAGGUAAAUAaa -5'
28272 5' -46.4 NC_005902.1 + 105099 0.7 0.99564
Target:  5'- uUAGUUaCCGUAGACUUCUAUUUAUUa -3'
miRNA:   3'- -AUCAGcGGUGUCUGAAGGUAAAUAAa -5'
28272 5' -46.4 NC_005902.1 + 93589 0.72 0.986032
Target:  5'- gGGUUGCCAUAGACUUCguuCAUUUuaaAUUUa -3'
miRNA:   3'- aUCAGCGGUGUCUGAAG---GUAAA---UAAA- -5'
28272 5' -46.4 NC_005902.1 + 18472 0.73 0.971692
Target:  5'- uUAGUUGCCAUAGAUUUCauucuUUUAUUUa -3'
miRNA:   3'- -AUCAGCGGUGUCUGAAGgu---AAAUAAA- -5'
28272 5' -46.4 NC_005902.1 + 48351 0.75 0.948956
Target:  5'- uUAGUUGUUAUAGACUUCUGUUUAUc- -3'
miRNA:   3'- -AUCAGCGGUGUCUGAAGGUAAAUAaa -5'
28272 5' -46.4 NC_005902.1 + 167600 0.8 0.753569
Target:  5'- uUAGUUGCCAUAGAUUUCCAUUc---- -3'
miRNA:   3'- -AUCAGCGGUGUCUGAAGGUAAauaaa -5'
28272 5' -46.4 NC_005902.1 + 181345 0.86 0.442652
Target:  5'- uUAGUCGUUAUAGACUUCCAUUUAUc- -3'
miRNA:   3'- -AUCAGCGGUGUCUGAAGGUAAAUAaa -5'
28272 5' -46.4 NC_005902.1 + 4727 1.04 0.048202
Target:  5'- uUAGUCGCCACAGACUUCCAUUUAUUUc -3'
miRNA:   3'- -AUCAGCGGUGUCUGAAGGUAAAUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.