Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28272 | 5' | -46.4 | NC_005902.1 | + | 90377 | 0.66 | 0.999935 |
Target: 5'- uUGGUUGCUAUAGACUUCa-------- -3' miRNA: 3'- -AUCAGCGGUGUCUGAAGguaaauaaa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 4659 | 0.66 | 0.999935 |
Target: 5'- --aUUGCUAUAGACUUCUAUUcAUUUu -3' miRNA: 3'- aucAGCGGUGUCUGAAGGUAAaUAAA- -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 103735 | 0.66 | 0.999935 |
Target: 5'- uUGGUUaCUAUAGACUUUUAUUUAUUg -3' miRNA: 3'- -AUCAGcGGUGUCUGAAGGUAAAUAAa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 100837 | 0.68 | 0.999591 |
Target: 5'- uUGGUCaCCAUAGACUUCUAg------ -3' miRNA: 3'- -AUCAGcGGUGUCUGAAGGUaaauaaa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 74726 | 0.68 | 0.999355 |
Target: 5'- uUGGUUGCUAUAaAUUUCCAUUUGUc- -3' miRNA: 3'- -AUCAGCGGUGUcUGAAGGUAAAUAaa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 105099 | 0.7 | 0.99564 |
Target: 5'- uUAGUUaCCGUAGACUUCUAUUUAUUa -3' miRNA: 3'- -AUCAGcGGUGUCUGAAGGUAAAUAAa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 93589 | 0.72 | 0.986032 |
Target: 5'- gGGUUGCCAUAGACUUCguuCAUUUuaaAUUUa -3' miRNA: 3'- aUCAGCGGUGUCUGAAG---GUAAA---UAAA- -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 18472 | 0.73 | 0.971692 |
Target: 5'- uUAGUUGCCAUAGAUUUCauucuUUUAUUUa -3' miRNA: 3'- -AUCAGCGGUGUCUGAAGgu---AAAUAAA- -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 48351 | 0.75 | 0.948956 |
Target: 5'- uUAGUUGUUAUAGACUUCUGUUUAUc- -3' miRNA: 3'- -AUCAGCGGUGUCUGAAGGUAAAUAaa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 167600 | 0.8 | 0.753569 |
Target: 5'- uUAGUUGCCAUAGAUUUCCAUUc---- -3' miRNA: 3'- -AUCAGCGGUGUCUGAAGGUAAauaaa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 181345 | 0.86 | 0.442652 |
Target: 5'- uUAGUCGUUAUAGACUUCCAUUUAUc- -3' miRNA: 3'- -AUCAGCGGUGUCUGAAGGUAAAUAaa -5' |
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28272 | 5' | -46.4 | NC_005902.1 | + | 4727 | 1.04 | 0.048202 |
Target: 5'- uUAGUCGCCACAGACUUCCAUUUAUUUc -3' miRNA: 3'- -AUCAGCGGUGUCUGAAGGUAAAUAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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