miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 156996 0.83 0.908838
Target:  5'- -aGUAUAUAGCUUAGGUGUU--AGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAuuUCCc -5'
28273 5' -42.1 NC_005902.1 + 156828 0.88 0.693127
Target:  5'- -cAUAUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 156432 0.8 0.974846
Target:  5'- -aGUAUAUAGCUUAaaUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUccACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 155125 0.66 1
Target:  5'- -aGUAUAUAGCUUGGaUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 154952 0.75 0.998644
Target:  5'- uUGUucAUAGCUUGGGUGUUAAAaGGu -3'
miRNA:   3'- uAUAuaUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 154876 0.69 1
Target:  5'- aAUGUGUuguCAGCauguagAGGaGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAu--GUCGaa----UCCaCAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 154792 0.8 0.97188
Target:  5'- -aGUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCAcaaUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 154624 0.9 0.591755
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 149948 0.8 0.974846
Target:  5'- -----cACAcCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uauauaUGUcGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 149895 0.79 0.980083
Target:  5'- -aAUAUAUAGCUUAGGU---AAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCAcaaUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 149409 0.69 1
Target:  5'- -aGUAUAUAGCUUAGGUaUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCAcAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 149241 0.74 0.999644
Target:  5'- cUGUGUAUAGCUUAaGUGUUAAAaGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 148258 0.72 0.999957
Target:  5'- uUAUAUACaaauaagcauagcaAGCUUAGGUGUUAAAa-- -3'
miRNA:   3'- uAUAUAUG--------------UCGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 148163 0.67 1
Target:  5'- uGUAaGUGCAGCgaaugcUAGGauUUAAAGGGu -3'
miRNA:   3'- -UAUaUAUGUCGa-----AUCCacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 147967 0.66 1
Target:  5'- gAUGUGguUAUAGCUUAGaUGUUAAAGu- -3'
miRNA:   3'- -UAUAU--AUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 147801 0.9 0.591755
Target:  5'- uUAUAUAUAGCUUAGGUGUUAcAGGa -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUuUCCc -5'
28273 5' -42.1 NC_005902.1 + 146800 0.7 0.999998
Target:  5'- -aGUAUAUAGCUUAGaUGUUAGAauGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUU--CCc -5'
28273 5' -42.1 NC_005902.1 + 146633 0.87 0.737061
Target:  5'- ----uUAUAGCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uauauAUGUCGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 146156 0.87 0.747797
Target:  5'- -aGUAUAUAGCUUAGaUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 145975 0.87 0.768885
Target:  5'- -cAUAUAUAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.