miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 181436 0.67 1
Target:  5'- -aGUAUAUAaCUUAGGaGUUAAAGGc -3'
miRNA:   3'- uaUAUAUGUcGAAUCCaCAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 142144 0.68 1
Target:  5'- -aGUAUAUAGUUUAGcUGUUAAAGa- -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 90828 0.68 1
Target:  5'- uUAUAUAUgaacaaucagcaAGCUUAGGUGUUAacccuuuaaauccuAAGGc -3'
miRNA:   3'- uAUAUAUG------------UCGAAUCCACAAU--------------UUCCc -5'
28273 5' -42.1 NC_005902.1 + 52981 0.68 1
Target:  5'- --uUAUAUAaCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uauAUAUGUcGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 147967 0.66 1
Target:  5'- gAUGUGguUAUAGCUUAGaUGUUAAAGu- -3'
miRNA:   3'- -UAUAU--AUGUCGAAUCcACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 74816 0.68 1
Target:  5'- uUAUAUAUAGCUUAuauaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUccacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 142206 0.68 1
Target:  5'- uUGUAUAUAGCUUAaaUGUUAAAGa- -3'
miRNA:   3'- uAUAUAUGUCGAAUccACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 10597 0.69 0.999999
Target:  5'- -aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- uaUAUAUGUCGAAUcCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 73077 0.69 0.999999
Target:  5'- uUGUAUAUuaCUUAuGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGucGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 85095 0.69 0.999999
Target:  5'- -----aAUAGCUUAGGaGUUuAGGGGu -3'
miRNA:   3'- uauauaUGUCGAAUCCaCAAuUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 175181 0.7 0.999998
Target:  5'- uUGUAUAUAGCUUAaGUGUUAGAa-- -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 58435 0.7 0.999998
Target:  5'- --cUAUAUAGCUUAuGUGUUAAAGa- -3'
miRNA:   3'- uauAUAUGUCGAAUcCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 34922 0.7 0.999998
Target:  5'- -cAUAUAUAGUaUAGGUGUuaaaagaaUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGaAUCCACA--------AUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 93920 0.7 0.999998
Target:  5'- --cUAUAUAGCUUAGGU---AAAGGa -3'
miRNA:   3'- uauAUAUGUCGAAUCCAcaaUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 146800 0.7 0.999998
Target:  5'- -aGUAUAUAGCUUAGaUGUUAGAauGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAAUUU--CCc -5'
28273 5' -42.1 NC_005902.1 + 5596 0.7 0.999998
Target:  5'- uGUAUAUAUAGUUUAGuUGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUCcACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 12753 0.7 0.999998
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUcGAAUCCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 58572 0.7 0.999998
Target:  5'- --cUAUAUAGCUUAuGUGUUAAAGa- -3'
miRNA:   3'- uauAUAUGUCGAAUcCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 37469 0.7 0.999998
Target:  5'- uAUGUAUAUAGCUUAaGUGUUAAGa-- -3'
miRNA:   3'- -UAUAUAUGUCGAAUcCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 163657 0.7 0.999998
Target:  5'- --uUAUAUAGcCUUAGGauUUAAAGGGu -3'
miRNA:   3'- uauAUAUGUC-GAAUCCacAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.