Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28274 | 3' | -40.2 | NC_005902.1 | + | 11121 | 1.08 | 0.136135 |
Target: 5'- gGAUUAACCCUUUAAAUCCAUGUUGUUg -3' miRNA: 3'- -CUAAUUGGGAAAUUUAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 11175 | 0.9 | 0.744714 |
Target: 5'- gGGUUAACCCUUUAAAUCCAcauUGUUGa- -3' miRNA: 3'- -CUAAUUGGGAAAUUUAGGU---ACAACaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 23353 | 0.87 | 0.880063 |
Target: 5'- -uUUAACCCUUUAAuUCUAUGUUGUUa -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 140891 | 0.81 | 0.987375 |
Target: 5'- gGGUUAAUCCUUaAAcUCCAUGUUGUUg -3' miRNA: 3'- -CUAAUUGGGAAaUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 51615 | 0.8 | 0.990495 |
Target: 5'- uAUUAACCCUUUAAuUCCuaauGUGUUGUUa -3' miRNA: 3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 37317 | 0.8 | 0.992975 |
Target: 5'- ----uACCCUUUAAcUCCAUGUUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 113790 | 0.78 | 0.997929 |
Target: 5'- gGAUaauAUCCUUUGAuUCCAUGUUGUUa -3' miRNA: 3'- -CUAau-UGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 28074 | 0.78 | 0.9983 |
Target: 5'- cAUUAACCCUUUAAAUCCuaAUGUuugcUGUg -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG--UACA----ACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 10740 | 0.76 | 0.999548 |
Target: 5'- aAUUAACCCUUUAAcUCUuaagAUGUUGUUa -3' miRNA: 3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 82109 | 0.76 | 0.999548 |
Target: 5'- ----cACCUUUUAAcUCCAUGUUGUUa -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 52436 | 0.74 | 0.999971 |
Target: 5'- uGUUAACCCUUUAAAUCCuaggacuuauauaaGUGUaGUg -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG--------------UACAaCAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 139814 | 0.73 | 0.999991 |
Target: 5'- ----uACCUUUUAAcUCCAUGUUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 35156 | 0.72 | 0.999997 |
Target: 5'- cAUUAACCCUUUAAccCCAUaUUGUUg -3' miRNA: 3'- cUAAUUGGGAAAUUuaGGUAcAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 75085 | 0.72 | 0.999999 |
Target: 5'- -uUUAACCCUUUAAcUCCuaaugcGUUGUUg -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGua----CAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 78883 | 0.69 | 1 |
Target: 5'- -uUUAACCCUUUAAAUCCuagGg---- -3' miRNA: 3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 76600 | 0.7 | 1 |
Target: 5'- -uUUAAUCCUUUAAuUCUAUGcUGUUa -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGUACaACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 55245 | 0.7 | 1 |
Target: 5'- ----uACCCUUUAAuUCCAUGcUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACaACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 52694 | 0.69 | 1 |
Target: 5'- -uUUAACCCUUUAAAUCCuagGg---- -3' miRNA: 3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 81351 | 0.68 | 1 |
Target: 5'- ----uAUCCUUUAAAUCCuaaggGUUGUa -3' miRNA: 3'- cuaauUGGGAAAUUUAGGua---CAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 15924 | 0.66 | 1 |
Target: 5'- aAUUAAUCCUUUAAuUCC-UGggGUa -3' miRNA: 3'- cUAAUUGGGAAAUUuAGGuACaaCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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