miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 3' -40.2 NC_005902.1 + 11121 1.08 0.136135
Target:  5'- gGAUUAACCCUUUAAAUCCAUGUUGUUg -3'
miRNA:   3'- -CUAAUUGGGAAAUUUAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 11175 0.9 0.744714
Target:  5'- gGGUUAACCCUUUAAAUCCAcauUGUUGa- -3'
miRNA:   3'- -CUAAUUGGGAAAUUUAGGU---ACAACaa -5'
28274 3' -40.2 NC_005902.1 + 23353 0.87 0.880063
Target:  5'- -uUUAACCCUUUAAuUCUAUGUUGUUa -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 140891 0.81 0.987375
Target:  5'- gGGUUAAUCCUUaAAcUCCAUGUUGUUg -3'
miRNA:   3'- -CUAAUUGGGAAaUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 51615 0.8 0.990495
Target:  5'- uAUUAACCCUUUAAuUCCuaauGUGUUGUUa -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 37317 0.8 0.992975
Target:  5'- ----uACCCUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 113790 0.78 0.997929
Target:  5'- gGAUaauAUCCUUUGAuUCCAUGUUGUUa -3'
miRNA:   3'- -CUAau-UGGGAAAUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 28074 0.78 0.9983
Target:  5'- cAUUAACCCUUUAAAUCCuaAUGUuugcUGUg -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGG--UACA----ACAa -5'
28274 3' -40.2 NC_005902.1 + 10740 0.76 0.999548
Target:  5'- aAUUAACCCUUUAAcUCUuaagAUGUUGUUa -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 82109 0.76 0.999548
Target:  5'- ----cACCUUUUAAcUCCAUGUUGUUa -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 52436 0.74 0.999971
Target:  5'- uGUUAACCCUUUAAAUCCuaggacuuauauaaGUGUaGUg -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGG--------------UACAaCAa -5'
28274 3' -40.2 NC_005902.1 + 139814 0.73 0.999991
Target:  5'- ----uACCUUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 35156 0.72 0.999997
Target:  5'- cAUUAACCCUUUAAccCCAUaUUGUUg -3'
miRNA:   3'- cUAAUUGGGAAAUUuaGGUAcAACAA- -5'
28274 3' -40.2 NC_005902.1 + 75085 0.72 0.999999
Target:  5'- -uUUAACCCUUUAAcUCCuaaugcGUUGUUg -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGua----CAACAA- -5'
28274 3' -40.2 NC_005902.1 + 78883 0.69 1
Target:  5'- -uUUAACCCUUUAAAUCCuagGg---- -3'
miRNA:   3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5'
28274 3' -40.2 NC_005902.1 + 76600 0.7 1
Target:  5'- -uUUAAUCCUUUAAuUCUAUGcUGUUa -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUACaACAA- -5'
28274 3' -40.2 NC_005902.1 + 55245 0.7 1
Target:  5'- ----uACCCUUUAAuUCCAUGcUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACaACAa -5'
28274 3' -40.2 NC_005902.1 + 52694 0.69 1
Target:  5'- -uUUAACCCUUUAAAUCCuagGg---- -3'
miRNA:   3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5'
28274 3' -40.2 NC_005902.1 + 81351 0.68 1
Target:  5'- ----uAUCCUUUAAAUCCuaaggGUUGUa -3'
miRNA:   3'- cuaauUGGGAAAUUUAGGua---CAACAa -5'
28274 3' -40.2 NC_005902.1 + 15924 0.66 1
Target:  5'- aAUUAAUCCUUUAAuUCC-UGggGUa -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGGuACaaCAa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.