miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 3' -40.2 NC_005902.1 + 11121 1.08 0.136135
Target:  5'- gGAUUAACCCUUUAAAUCCAUGUUGUUg -3'
miRNA:   3'- -CUAAUUGGGAAAUUUAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 157909 0.69 1
Target:  5'- aGAUaaauACCCUUUAAcUCCAUGUg--- -3'
miRNA:   3'- -CUAau--UGGGAAAUUuAGGUACAacaa -5'
28274 3' -40.2 NC_005902.1 + 184442 0.7 1
Target:  5'- ---aAACCCUUUAAcUCUuaagGUGUUGUUa -3'
miRNA:   3'- cuaaUUGGGAAAUUuAGG----UACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 163442 0.71 1
Target:  5'- uGUUAACCCUUUAAAUCCu------- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGGuacaacaa -5'
28274 3' -40.2 NC_005902.1 + 52436 0.74 0.999971
Target:  5'- uGUUAACCCUUUAAAUCCuaggacuuauauaaGUGUaGUg -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGG--------------UACAaCAa -5'
28274 3' -40.2 NC_005902.1 + 37317 0.8 0.992975
Target:  5'- ----uACCCUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 76408 0.66 1
Target:  5'- gGAUUAaagaauaaguACUCUUUAAuUCCAcagUGUUGUUg -3'
miRNA:   3'- -CUAAU----------UGGGAAAUUuAGGU---ACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 14753 0.66 1
Target:  5'- -cUUAACCCUUUAAccCCAaacaUGUUGc- -3'
miRNA:   3'- cuAAUUGGGAAAUUuaGGU----ACAACaa -5'
28274 3' -40.2 NC_005902.1 + 165834 0.68 1
Target:  5'- aGUUAACCCUUUAAAUguuugCUAUGUucacuUGUa -3'
miRNA:   3'- cUAAUUGGGAAAUUUA-----GGUACA-----ACAa -5'
28274 3' -40.2 NC_005902.1 + 177363 0.7 1
Target:  5'- uGUUAACCCUUUAAAUCUuAUGg---- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGG-UACaacaa -5'
28274 3' -40.2 NC_005902.1 + 139814 0.73 0.999991
Target:  5'- ----uACCUUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 11175 0.9 0.744714
Target:  5'- gGGUUAACCCUUUAAAUCCAcauUGUUGa- -3'
miRNA:   3'- -CUAAUUGGGAAAUUUAGGU---ACAACaa -5'
28274 3' -40.2 NC_005902.1 + 48505 0.68 1
Target:  5'- aGGUUAACUCUUUAAAUCCuaaGUa--- -3'
miRNA:   3'- -CUAAUUGGGAAAUUUAGGua-CAacaa -5'
28274 3' -40.2 NC_005902.1 + 23353 0.87 0.880063
Target:  5'- -uUUAACCCUUUAAuUCUAUGUUGUUa -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 50363 0.7 1
Target:  5'- aAUUAACCCUUUAAAUCCu------- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGGuacaacaa -5'
28274 3' -40.2 NC_005902.1 + 136722 0.67 1
Target:  5'- gGAUaauAUUCUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- -CUAau-UGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 15924 0.66 1
Target:  5'- aAUUAAUCCUUUAAuUCC-UGggGUa -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGGuACaaCAa -5'
28274 3' -40.2 NC_005902.1 + 140891 0.81 0.987375
Target:  5'- gGGUUAAUCCUUaAAcUCCAUGUUGUUg -3'
miRNA:   3'- -CUAAUUGGGAAaUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 174663 0.68 1
Target:  5'- ----uACCCUUUAAuUCCAUaUUGUUa -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUAcAACAA- -5'
28274 3' -40.2 NC_005902.1 + 55245 0.7 1
Target:  5'- ----uACCCUUUAAuUCCAUGcUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACaACAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.