Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28274 | 3' | -40.2 | NC_005902.1 | + | 181211 | 0.69 | 1 |
Target: 5'- -uUUAGCCCUUUAAcUCCuaaagcGUUGUc -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGua----CAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 44043 | 0.68 | 1 |
Target: 5'- --aUAACCCUUUAAAUCCuaagGcUUGc- -3' miRNA: 3'- cuaAUUGGGAAAUUUAGGua--C-AACaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 17057 | 0.67 | 1 |
Target: 5'- ----uACCUUUUAAcUCUAUGUUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 39407 | 0.67 | 1 |
Target: 5'- aGUUAACCUUUUAAcUCCAUaUUGa- -3' miRNA: 3'- cUAAUUGGGAAAUUuAGGUAcAACaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 58576 | 0.67 | 1 |
Target: 5'- ---cAACCCUUUAAcUCCAUGcgucaucaauacuUUGUg -3' miRNA: 3'- cuaaUUGGGAAAUUuAGGUAC-------------AACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 55125 | 0.66 | 1 |
Target: 5'- -uUUAACCCUUUAAuUCCGcaUUGUc -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGUacAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 52694 | 0.69 | 1 |
Target: 5'- -uUUAACCCUUUAAAUCCuagGg---- -3' miRNA: 3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 78883 | 0.69 | 1 |
Target: 5'- -uUUAACCCUUUAAAUCCuagGg---- -3' miRNA: 3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 76600 | 0.7 | 1 |
Target: 5'- -uUUAAUCCUUUAAuUCUAUGcUGUUa -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGUACaACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 88489 | 0.68 | 1 |
Target: 5'- uGUUAAUCCUUUAAAUCUuaAUGUUu-- -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG--UACAAcaa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 75085 | 0.72 | 0.999999 |
Target: 5'- -uUUAACCCUUUAAcUCCuaaugcGUUGUUg -3' miRNA: 3'- cuAAUUGGGAAAUUuAGGua----CAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 35156 | 0.72 | 0.999997 |
Target: 5'- cAUUAACCCUUUAAccCCAUaUUGUUg -3' miRNA: 3'- cUAAUUGGGAAAUUuaGGUAcAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 139814 | 0.73 | 0.999991 |
Target: 5'- ----uACCUUUUAAcUCCAUGUUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 52436 | 0.74 | 0.999971 |
Target: 5'- uGUUAACCCUUUAAAUCCuaggacuuauauaaGUGUaGUg -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG--------------UACAaCAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 82109 | 0.76 | 0.999548 |
Target: 5'- ----cACCUUUUAAcUCCAUGUUGUUa -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 10740 | 0.76 | 0.999548 |
Target: 5'- aAUUAACCCUUUAAcUCUuaagAUGUUGUUa -3' miRNA: 3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 28074 | 0.78 | 0.9983 |
Target: 5'- cAUUAACCCUUUAAAUCCuaAUGUuugcUGUg -3' miRNA: 3'- cUAAUUGGGAAAUUUAGG--UACA----ACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 113790 | 0.78 | 0.997929 |
Target: 5'- gGAUaauAUCCUUUGAuUCCAUGUUGUUa -3' miRNA: 3'- -CUAau-UGGGAAAUUuAGGUACAACAA- -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 37317 | 0.8 | 0.992975 |
Target: 5'- ----uACCCUUUAAcUCCAUGUUGUc -3' miRNA: 3'- cuaauUGGGAAAUUuAGGUACAACAa -5' |
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28274 | 3' | -40.2 | NC_005902.1 | + | 51615 | 0.8 | 0.990495 |
Target: 5'- uAUUAACCCUUUAAuUCCuaauGUGUUGUUa -3' miRNA: 3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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