miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 3' -40.2 NC_005902.1 + 58576 0.67 1
Target:  5'- ---cAACCCUUUAAcUCCAUGcgucaucaauacuUUGUg -3'
miRNA:   3'- cuaaUUGGGAAAUUuAGGUAC-------------AACAa -5'
28274 3' -40.2 NC_005902.1 + 67301 0.7 1
Target:  5'- cAUUAACUCUUUAA-UCCuaagGUGUUGUUg -3'
miRNA:   3'- cUAAUUGGGAAAUUuAGG----UACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 75085 0.72 0.999999
Target:  5'- -uUUAACCCUUUAAcUCCuaaugcGUUGUUg -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGua----CAACAA- -5'
28274 3' -40.2 NC_005902.1 + 76408 0.66 1
Target:  5'- gGAUUAaagaauaaguACUCUUUAAuUCCAcagUGUUGUUg -3'
miRNA:   3'- -CUAAU----------UGGGAAAUUuAGGU---ACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 76600 0.7 1
Target:  5'- -uUUAAUCCUUUAAuUCUAUGcUGUUa -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUACaACAA- -5'
28274 3' -40.2 NC_005902.1 + 78883 0.69 1
Target:  5'- -uUUAACCCUUUAAAUCCuagGg---- -3'
miRNA:   3'- cuAAUUGGGAAAUUUAGGua-Caacaa -5'
28274 3' -40.2 NC_005902.1 + 81351 0.68 1
Target:  5'- ----uAUCCUUUAAAUCCuaaggGUUGUa -3'
miRNA:   3'- cuaauUGGGAAAUUUAGGua---CAACAa -5'
28274 3' -40.2 NC_005902.1 + 82109 0.76 0.999548
Target:  5'- ----cACCUUUUAAcUCCAUGUUGUUa -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 88489 0.68 1
Target:  5'- uGUUAAUCCUUUAAAUCUuaAUGUUu-- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGG--UACAAcaa -5'
28274 3' -40.2 NC_005902.1 + 90800 0.71 1
Target:  5'- uGUUAACCCUUUAAAUCCu------- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGGuacaacaa -5'
28274 3' -40.2 NC_005902.1 + 97491 0.69 1
Target:  5'- -uUUAACCCUUUAAuUCUAUaUUGUc -3'
miRNA:   3'- cuAAUUGGGAAAUUuAGGUAcAACAa -5'
28274 3' -40.2 NC_005902.1 + 113790 0.78 0.997929
Target:  5'- gGAUaauAUCCUUUGAuUCCAUGUUGUUa -3'
miRNA:   3'- -CUAau-UGGGAAAUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 136722 0.67 1
Target:  5'- gGAUaauAUUCUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- -CUAau-UGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 139814 0.73 0.999991
Target:  5'- ----uACCUUUUAAcUCCAUGUUGUc -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUACAACAa -5'
28274 3' -40.2 NC_005902.1 + 140891 0.81 0.987375
Target:  5'- gGGUUAAUCCUUaAAcUCCAUGUUGUUg -3'
miRNA:   3'- -CUAAUUGGGAAaUUuAGGUACAACAA- -5'
28274 3' -40.2 NC_005902.1 + 157909 0.69 1
Target:  5'- aGAUaaauACCCUUUAAcUCCAUGUg--- -3'
miRNA:   3'- -CUAau--UGGGAAAUUuAGGUACAacaa -5'
28274 3' -40.2 NC_005902.1 + 162101 0.68 1
Target:  5'- gGGUUAACCCaUUAAAUCCAa------ -3'
miRNA:   3'- -CUAAUUGGGaAAUUUAGGUacaacaa -5'
28274 3' -40.2 NC_005902.1 + 163442 0.71 1
Target:  5'- uGUUAACCCUUUAAAUCCu------- -3'
miRNA:   3'- cUAAUUGGGAAAUUUAGGuacaacaa -5'
28274 3' -40.2 NC_005902.1 + 165834 0.68 1
Target:  5'- aGUUAACCCUUUAAAUguuugCUAUGUucacuUGUa -3'
miRNA:   3'- cUAAUUGGGAAAUUUA-----GGUACA-----ACAa -5'
28274 3' -40.2 NC_005902.1 + 174663 0.68 1
Target:  5'- ----uACCCUUUAAuUCCAUaUUGUUa -3'
miRNA:   3'- cuaauUGGGAAAUUuAGGUAcAACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.