Results 1 - 20 of 124 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 11155 | 1.09 | 0.041387 |
Target: 5'- uGCAUCAUCAAUGACACAUAGGGUUAAc -3' miRNA: 3'- -CGUAGUAGUUACUGUGUAUCCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 158134 | 0.93 | 0.305025 |
Target: 5'- aGCAUCAUCGAUGACACAUGGaGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 58817 | 0.87 | 0.561806 |
Target: 5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 58189 | 0.87 | 0.561806 |
Target: 5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 42514 | 0.87 | 0.583836 |
Target: 5'- aGCAUCAUCGAUGACACAUAGaaUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGUAUCccAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 16839 | 0.85 | 0.66175 |
Target: 5'- aGCGUCAUCAAUGACaACAUAGaGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 161992 | 0.84 | 0.716748 |
Target: 5'- uGUAUCAUCAAUGACACcuUAGGuGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 54903 | 0.83 | 0.759269 |
Target: 5'- aGCAUCAUCAAUGACAaugcggaAUuaaAGGGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUg------UA---UCCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 136651 | 0.83 | 0.779775 |
Target: 5'- uGCAUCAUUGAUGACACuuUAGGGaUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 50428 | 0.82 | 0.799653 |
Target: 5'- gGCAUCAUCGAUGACAUAUuuGGaGUUAu -3' miRNA: 3'- -CGUAGUAGUUACUGUGUAu-CC-CAAUu -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 71897 | 0.82 | 0.809327 |
Target: 5'- cGCAUCAUCAAUGACGuguUAGGaGUUAAg -3' miRNA: 3'- -CGUAGUAGUUACUGUgu-AUCC-CAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 142319 | 0.82 | 0.828093 |
Target: 5'- aGCAUCAUCGAUGACAaugugggauUAaAGGGUUAAc -3' miRNA: 3'- -CGUAGUAGUUACUGU---------GUaUCCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 37352 | 0.81 | 0.871143 |
Target: 5'- gGCGUCAUCGAUGAUGCcuUAGGaGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 98977 | 0.8 | 0.885887 |
Target: 5'- aGCAUUGUUAGUGAUACAUgaguuaaAGGGUUAAc -3' miRNA: 3'- -CGUAGUAGUUACUGUGUA-------UCCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 139846 | 0.8 | 0.886636 |
Target: 5'- uGCAUCAUUGAUGACGcCAUgaguuaGGGGUUAAc -3' miRNA: 3'- -CGUAGUAGUUACUGU-GUA------UCCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 167309 | 0.8 | 0.901063 |
Target: 5'- aCAUUGUCAAUGACACAUuuGGUUAAa -3' miRNA: 3'- cGUAGUAGUUACUGUGUAucCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 149172 | 0.8 | 0.901063 |
Target: 5'- aCAUCAUCGAUGACAUuuUAGGaGUUAAu -3' miRNA: 3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 83680 | 0.79 | 0.910506 |
Target: 5'- aGCAUCAUCGAUGAUACAaaacauuaucaaugaUGcuGGGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGU---------------AU--CCCAAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 87224 | 0.79 | 0.920624 |
Target: 5'- aGCGUUAUCAAUGAUACcuUAGGGaUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5' |
|||||||
28274 | 5' | -44.3 | NC_005902.1 | + | 136947 | 0.78 | 0.93764 |
Target: 5'- aGCAUUGUCAAUGACaACAUGGaGUUAAa -3' miRNA: 3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home