miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 11155 1.09 0.041387
Target:  5'- uGCAUCAUCAAUGACACAUAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 158134 0.93 0.305025
Target:  5'- aGCAUCAUCGAUGACACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58817 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 58189 0.87 0.561806
Target:  5'- aGCAUCAUCAAUGAUGCGUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 42514 0.87 0.583836
Target:  5'- aGCAUCAUCGAUGACACAUAGaaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCccAAUU- -5'
28274 5' -44.3 NC_005902.1 + 16839 0.85 0.66175
Target:  5'- aGCGUCAUCAAUGACaACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 161992 0.84 0.716748
Target:  5'- uGUAUCAUCAAUGACACcuUAGGuGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 54903 0.83 0.759269
Target:  5'- aGCAUCAUCAAUGACAaugcggaAUuaaAGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUg------UA---UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 136651 0.83 0.779775
Target:  5'- uGCAUCAUUGAUGACACuuUAGGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5'
28274 5' -44.3 NC_005902.1 + 50428 0.82 0.799653
Target:  5'- gGCAUCAUCGAUGACAUAUuuGGaGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAu-CC-CAAUu -5'
28274 5' -44.3 NC_005902.1 + 71897 0.82 0.809327
Target:  5'- cGCAUCAUCAAUGACGuguUAGGaGUUAAg -3'
miRNA:   3'- -CGUAGUAGUUACUGUgu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 142319 0.82 0.828093
Target:  5'- aGCAUCAUCGAUGACAaugugggauUAaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU---------GUaUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 37352 0.81 0.871143
Target:  5'- gGCGUCAUCGAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 98977 0.8 0.885887
Target:  5'- aGCAUUGUUAGUGAUACAUgaguuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUA-------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 139846 0.8 0.886636
Target:  5'- uGCAUCAUUGAUGACGcCAUgaguuaGGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGU-GUA------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 167309 0.8 0.901063
Target:  5'- aCAUUGUCAAUGACACAUuuGGUUAAa -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAucCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 149172 0.8 0.901063
Target:  5'- aCAUCAUCGAUGACAUuuUAGGaGUUAAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 83680 0.79 0.910506
Target:  5'- aGCAUCAUCGAUGAUACAaaacauuaucaaugaUGcuGGGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGU---------------AU--CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 87224 0.79 0.920624
Target:  5'- aGCGUUAUCAAUGAUACcuUAGGGaUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCCC-AAUU- -5'
28274 5' -44.3 NC_005902.1 + 136947 0.78 0.93764
Target:  5'- aGCAUUGUCAAUGACaACAUGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.