miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28274 5' -44.3 NC_005902.1 + 3344 0.68 0.99999
Target:  5'- aCAUUGUCAGUGACGUAUAcGGaGUUAAu -3'
miRNA:   3'- cGUAGUAGUUACUGUGUAU-CC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 4570 0.74 0.991681
Target:  5'- aGCAUUAUCAAUGACAUAaAGuGUUAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCcCAAUu -5'
28274 5' -44.3 NC_005902.1 + 11100 0.77 0.956397
Target:  5'- uGCAUCAUCAAUGAUaAUAUAGGaUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCCcAAUU- -5'
28274 5' -44.3 NC_005902.1 + 11155 1.09 0.041387
Target:  5'- uGCAUCAUCAAUGACACAUAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUAUCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 11284 0.78 0.942746
Target:  5'- aGUAUCAUCAAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 11412 0.78 0.941243
Target:  5'- gGCAUCAUCAAUGACAUaaagcaucaacaauGUggauuuaaAGGGUUAAc -3'
miRNA:   3'- -CGUAGUAGUUACUGUG--------------UA--------UCCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 16820 0.67 0.999998
Target:  5'- gGCAUCAUUGAUGACACAa-------- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaucccaauu -5'
28274 5' -44.3 NC_005902.1 + 16839 0.85 0.66175
Target:  5'- aGCGUCAUCAAUGACaACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUG-UGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 17022 0.75 0.983682
Target:  5'- uGUGUCAUCAAUGAUGCcuUAGGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 19672 0.67 0.999999
Target:  5'- aGCGUCAuUCGAcuUGGaaaaGCAUGuGGGUUAAu -3'
miRNA:   3'- -CGUAGU-AGUU--ACUg---UGUAU-CCCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 20090 0.68 0.999986
Target:  5'- -uGUCAUCGAUGACAUgaguUAGGaGUa-- -3'
miRNA:   3'- cgUAGUAGUUACUGUGu---AUCC-CAauu -5'
28274 5' -44.3 NC_005902.1 + 20200 0.67 0.999998
Target:  5'- -uGUUAUCAAUGAUGCcuUAGGaGUUAAc -3'
miRNA:   3'- cgUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 20436 0.71 0.999472
Target:  5'- aCAUUAUCAAUGAUGCcuUAGGaGUUAAc -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 25084 0.66 1
Target:  5'- aGCGUUGUUGAcGAUACAUAGaGUUAAa -3'
miRNA:   3'- -CGUAGUAGUUaCUGUGUAUCcCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 25418 0.66 0.999999
Target:  5'- gGCGUUGUCAAUGACACAaAGu----- -3'
miRNA:   3'- -CGUAGUAGUUACUGUGUaUCccaauu -5'
28274 5' -44.3 NC_005902.1 + 26336 0.74 0.990402
Target:  5'- gGCAUCAUCAAUGACGCuuuGUAuuGUUGAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUG---UAUccCAAUU- -5'
28274 5' -44.3 NC_005902.1 + 26423 0.75 0.985624
Target:  5'- cCAUCGUCAAUGAUGCcuUAGGaGUUAAg -3'
miRNA:   3'- cGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 26539 0.74 0.991681
Target:  5'- aGCGUCAUUGAUGAUGCcuUAGGaGUUAAu -3'
miRNA:   3'- -CGUAGUAGUUACUGUGu-AUCC-CAAUU- -5'
28274 5' -44.3 NC_005902.1 + 27745 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5'
28274 5' -44.3 NC_005902.1 + 27834 0.77 0.964152
Target:  5'- gGCAUCAUCGccgAUGGCACAgacuuaAGGGUa-- -3'
miRNA:   3'- -CGUAGUAGU---UACUGUGUa-----UCCCAauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.