Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28275 | 3' | -41.3 | NC_005902.1 | + | 10491 | 0.66 | 1 |
Target: 5'- -aGCAUU---AUCGAUaAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUUAcUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 11192 | 0.71 | 0.999998 |
Target: 5'- cCACAUUgUUGAugcuuuaugucaUUGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAA-AACU------------AGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 11289 | 0.77 | 0.997649 |
Target: 5'- uGCAaaguaucAUCAAUGAUGCCUUAGg -3' miRNA: 3'- -CGUguaaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 16089 | 0.72 | 0.999994 |
Target: 5'- -uGCAUUguuaaUAAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacuaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 17029 | 0.79 | 0.988927 |
Target: 5'- -gACGcUUUGugucAUCAAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUaAAAC----UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 20070 | 0.66 | 1 |
Target: 5'- -gACAU----GUCAAUGAUGCUUUAu -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 20193 | 0.94 | 0.486732 |
Target: 5'- uGCACAUUguuAUCAAUGAUGCCUUAGg -3' miRNA: 3'- -CGUGUAAaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 20438 | 0.86 | 0.850557 |
Target: 5'- aCACAUU---AUCAAUGAUGCCUUAGg -3' miRNA: 3'- cGUGUAAaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 26428 | 0.77 | 0.997819 |
Target: 5'- cUACAccaucGUCAAUGAUGCCUUAGg -3' miRNA: 3'- cGUGUaaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 26539 | 0.69 | 1 |
Target: 5'- -aGCGUc---AUUGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 27631 | 0.7 | 1 |
Target: 5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3' miRNA: 3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 27948 | 0.7 | 1 |
Target: 5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3' miRNA: 3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 28705 | 0.75 | 0.999606 |
Target: 5'- cCACAUuuuacaaugcUUUGAgUCAuagAUGAUGCCUUAGa -3' miRNA: 3'- cGUGUA----------AAACU-AGU---UACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 29535 | 0.68 | 1 |
Target: 5'- cCACGg--UGucAUCAAUGAUGCUUUGu -3' miRNA: 3'- cGUGUaaaAC--UAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 37346 | 0.77 | 0.997819 |
Target: 5'- aCACAaggcgucAUCGAUGAUGCCUUAGg -3' miRNA: 3'- cGUGUaaaac--UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 50201 | 0.75 | 0.999761 |
Target: 5'- -aGCAUU---AUUGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 50632 | 0.75 | 0.999692 |
Target: 5'- -aAUAUguc-AUCGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 55110 | 0.66 | 1 |
Target: 5'- cCGCAUUgucAUUGAUGAUGCUUUGu -3' miRNA: 3'- cGUGUAAaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 55216 | 0.71 | 0.999997 |
Target: 5'- aUACuuugUGuuAUUAAUGAUGCCUUAGg -3' miRNA: 3'- cGUGuaaaAC--UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 63337 | 0.67 | 1 |
Target: 5'- uUACcUUUUGGauaUCAaugAUGAUGCCUUAa -3' miRNA: 3'- cGUGuAAAACU---AGU---UACUACGGAAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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