miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 20193 0.94 0.486732
Target:  5'- uGCACAUUguuAUCAAUGAUGCCUUAGg -3'
miRNA:   3'- -CGUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 99692 0.69 1
Target:  5'- cCACAUU---GUUGAUGAcGCCUUAGg -3'
miRNA:   3'- cGUGUAAaacUAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 125712 0.68 1
Target:  5'- uCACAUcauuAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 20070 0.66 1
Target:  5'- -gACAU----GUCAAUGAUGCUUUAu -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 37346 0.77 0.997819
Target:  5'- aCACAaggcgucAUCGAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGUaaaac--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 137959 0.76 0.998522
Target:  5'- -uGCAUU---AUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 28705 0.75 0.999606
Target:  5'- cCACAUuuuacaaugcUUUGAgUCAuagAUGAUGCCUUAGa -3'
miRNA:   3'- cGUGUA----------AAACU-AGU---UACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 172689 0.75 0.999692
Target:  5'- -gAUGUgaagUGuuGUCAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaa--AC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 67453 0.74 0.999893
Target:  5'- uGCuuUAUgcUG-UCAAUGAUGCCUUAGa -3'
miRNA:   3'- -CGu-GUAaaACuAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 118536 0.69 1
Target:  5'- uCAUAUc---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 16089 0.72 0.999994
Target:  5'- -uGCAUUguuaaUAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacuaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 106104 0.74 0.999816
Target:  5'- -----cUUUGcAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cguguaAAAC-UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 122858 0.82 0.955473
Target:  5'- -gACGUUUUGcauuGUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAAAC----UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 11192 0.71 0.999998
Target:  5'- cCACAUUgUUGAugcuuuaugucaUUGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAA-AACU------------AGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 142112 0.81 0.978941
Target:  5'- cCACAUUgucAUCGAUGAUGCUUUAGg -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 167334 0.74 0.999816
Target:  5'- -aACAUUauuAUCAAUGAUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 27631 0.7 1
Target:  5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3'
miRNA:   3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 100351 0.69 1
Target:  5'- cCAUAcugucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 144116 0.78 0.996253
Target:  5'- -aACAcUUUGuAUCAuUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUaAAAC-UAGUuACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 149284 0.76 0.998522
Target:  5'- -gACAUc---AUCGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.