miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 27841 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5'
28275 5' -44 NC_005902.1 + 106314 0.71 0.999584
Target:  5'- cUCCUAAGGCAUCAuUaaugcaaagcaucguUGAUGacaGUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGU-A---------------ACUAU---UACACaa -5'
28275 5' -44 NC_005902.1 + 167728 0.77 0.958008
Target:  5'- cUCCUAAGGCAUUAUuaaUGAUGAUGc--- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAUUACacaa -5'
28275 5' -44 NC_005902.1 + 37561 0.79 0.916481
Target:  5'- cUCCUAAGGCAUCuc-GAUGAcgccuUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGuaaCUAUU-----ACACAA- -5'
28275 5' -44 NC_005902.1 + 67288 0.8 0.881267
Target:  5'- aUCCUAAGGUGUUGUugaUGAUAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 10700 0.81 0.865277
Target:  5'- uUCCUAAGGCAUUAUcGAUAAugcuuUGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUU-----ACACAa -5'
28275 5' -44 NC_005902.1 + 144330 0.83 0.791907
Target:  5'- cUCCUAAGGCAUCAaUGAUAcaaaGUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUaACUAUua--CACAA- -5'
28275 5' -44 NC_005902.1 + 148421 0.84 0.740067
Target:  5'- uUCCUAAGGUAUUGUUGAUAAUGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 34995 0.84 0.718451
Target:  5'- cUCCUAAGGUAUCAUUaAUAAUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 149493 0.87 0.5957
Target:  5'- aUCCUAAGGCAUCAUcGAUGAUGUc-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 138169 0.78 0.953804
Target:  5'- uUCCUAAGGCAUCAUUaAUAAUGc--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcUAUUACacaa -5'
28275 5' -44 NC_005902.1 + 48409 0.77 0.965614
Target:  5'- cUCCUAAGGCGUCAUcGAUGAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 143770 0.71 0.999279
Target:  5'- cUCCUAAGauGUCAUUGAcaaUGAUGUGg- -3'
miRNA:   3'- -AGGAUUCcgUAGUAACU---AUUACACaa -5'
28275 5' -44 NC_005902.1 + 162128 0.72 0.999104
Target:  5'- cCCUAAGGUGUUAUUGAUGAcaguaUGggGUUa -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUU-----ACa-CAA- -5'
28275 5' -44 NC_005902.1 + 172905 0.74 0.993356
Target:  5'- cCCUAAGGCAUCAUUGAc-------- -3'
miRNA:   3'- aGGAUUCCGUAGUAACUauuacacaa -5'
28275 5' -44 NC_005902.1 + 137781 0.74 0.992273
Target:  5'- cUCCUAuGGCAUUAUUGAUAAcagcGUGg- -3'
miRNA:   3'- -AGGAUuCCGUAGUAACUAUUa---CACaa -5'
28275 5' -44 NC_005902.1 + 167546 0.75 0.988169
Target:  5'- uUCCUAAaGCAUCAUUGAUAAUaaUGUUg -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUUAc-ACAA- -5'
28275 5' -44 NC_005902.1 + 50392 0.76 0.97512
Target:  5'- aCCUAAGGUAUCAUcaaUGAU-AUGUGa- -3'
miRNA:   3'- aGGAUUCCGUAGUA---ACUAuUACACaa -5'
28275 5' -44 NC_005902.1 + 99902 0.77 0.972194
Target:  5'- uUCCUAAGGCGUCAUcaacAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAacuaUUACACaa -5'
28275 5' -44 NC_005902.1 + 156704 0.77 0.965614
Target:  5'- cUCUUAAGGCAUCAUcaAUGAUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUUACACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.