miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 91998 0.69 0.998099
Target:  5'- uGCCCUUUAACuuuuuaaauACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUG---------UGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 1260 0.69 0.998099
Target:  5'- aACUCUUcAACACCUAGGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGaUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 95762 0.69 0.998943
Target:  5'- uACCUUUUAACACUUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 114596 0.69 0.998428
Target:  5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 162274 0.69 0.998099
Target:  5'- aAUCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 67604 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 51674 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 127944 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 156643 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 26512 0.69 0.998707
Target:  5'- aAUCUUUUAAUACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 149453 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 21308 0.69 0.998707
Target:  5'- uACCUUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 114034 0.69 0.999141
Target:  5'- aAUCCgUUAACACCUAAACUAUaUAUAc -3'
miRNA:   3'- -UGGGaGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 91307 0.69 0.998943
Target:  5'- uACCUUUUAACACUUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 67959 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 136044 0.7 0.995468
Target:  5'- aACCCUUUAACuCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29449 0.7 0.997714
Target:  5'- aACCCUUUAACACCcAAAUUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGaUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 166126 0.7 0.995468
Target:  5'- uACCCUUUAAUACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 50103 0.7 0.997266
Target:  5'- aACCCUuugaucCUAACACCUAAGCUAcauacuuacUGUGc- -3'
miRNA:   3'- -UGGGA------GAUUGUGGAUUUGGU---------ACAUau -5'
28276 3' -46.5 NC_005902.1 + 163385 0.7 0.996748
Target:  5'- aACCCuUUUAACAUCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.