miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 143891 0.7 0.997266
Target:  5'- cACCCUUUAACAUCUAAAUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 50103 0.7 0.997266
Target:  5'- aACCCUuugaucCUAACACCUAAGCUAcauacuuacUGUGc- -3'
miRNA:   3'- -UGGGA------GAUUGUGGAUUUGGU---------ACAUau -5'
28276 3' -46.5 NC_005902.1 + 166126 0.7 0.995468
Target:  5'- uACCCUUUAAUACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 26745 0.7 0.995468
Target:  5'- aACCCUUUAACAUUUAAGCUAU-UAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 136300 0.7 0.996151
Target:  5'- uACCCUUUAACuCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 123016 0.7 0.996151
Target:  5'- uACCCUUUAACcCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 67244 0.7 0.996151
Target:  5'- uACCCUUUAACuCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 90568 0.7 0.996151
Target:  5'- gGCCCccaacguauUUUGAaACCUAAACCGUGUAa- -3'
miRNA:   3'- -UGGG---------AGAUUgUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 83987 0.7 0.9964
Target:  5'- aACCCUUUAACACUUAAgugauauacucacucACCAcauuuguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 105081 0.7 0.996748
Target:  5'- aACCCUUUAAUACCUAccuaAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAU----UUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 78452 0.7 0.997266
Target:  5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 116630 0.7 0.995468
Target:  5'- aACUUUUUAACACCUAAGCUAUauacaagugaGUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 42237 0.71 0.994688
Target:  5'- -aCCUCuUAACACCUAAGCUAUauacaaaugaGUAUAu -3'
miRNA:   3'- ugGGAG-AUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 101071 0.71 0.994688
Target:  5'- aACCCUUUAACAUCUAcACUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 52418 0.71 0.992145
Target:  5'- cACCCUUUAACACCUAAgugauauaccuguuuGCUuAUGUAc- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------------UGG-UACAUau -5'
28276 3' -46.5 NC_005902.1 + 155165 0.71 0.993803
Target:  5'- cACCUUUUAACACCcAAGCUAUGa--- -3'
miRNA:   3'- -UGGGAGAUUGUGGaUUUGGUACauau -5'
28276 3' -46.5 NC_005902.1 + 110350 0.71 0.994688
Target:  5'- uAUCCUUUAAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 167503 0.71 0.994688
Target:  5'- uACCCUUUAACACCUAAGuuAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUAcauau -5'
28276 3' -46.5 NC_005902.1 + 116881 0.71 0.993803
Target:  5'- uACCgUUUAACACCUAAACUAUa---- -3'
miRNA:   3'- -UGGgAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 76457 0.71 0.993218
Target:  5'- cACCCUUUAACACCUAAguuauauauuuagucACUAcacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.