miRNA display CGI


Results 81 - 100 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 42237 0.71 0.994688
Target:  5'- -aCCUCuUAACACCUAAGCUAUauacaaaugaGUAUAu -3'
miRNA:   3'- ugGGAG-AUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76654 0.71 0.99168
Target:  5'- uACCCUUUAACAUCUAAguuuGCUAUGcuUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU----UGGUAC--AUAU- -5'
28276 3' -46.5 NC_005902.1 + 6305 0.71 0.994604
Target:  5'- aACCCUUUAAUcuuuaagACCUAAGCCAUauacaaaugaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUG-------UGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 101071 0.71 0.994688
Target:  5'- aACCCUUUAACAUCUAcACUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 36160 0.71 0.994688
Target:  5'- aACCCuUUUAACAUCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 29705 0.72 0.985736
Target:  5'- uACCCuUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 5632 0.72 0.984618
Target:  5'- aAUUCUUUAACACCUAAGCUuauaugaacaagcauGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG---------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 28133 0.72 0.983837
Target:  5'- aACCCUUUAAUACUUAAGCUAUauacaagugaGUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 69309 0.72 0.989018
Target:  5'- aACCCUUUAACACCUAggUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuuGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 108856 0.72 0.990421
Target:  5'- aACCCUUcAACACCUAAAUUAUaUAUAa -3'
miRNA:   3'- -UGGGAGaUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 137772 0.72 0.98746
Target:  5'- aACUUUUUAACACCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 61863 0.72 0.990421
Target:  5'- aACUCUUUAACAUCUAAGCUAuacucaaucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 37500 0.72 0.985736
Target:  5'- uAUCCUUUAACACUUAAGCUauaugaacggguAUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 110167 0.72 0.985736
Target:  5'- aACCCUUUAAgACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 48252 0.72 0.983837
Target:  5'- aAUCCUUUAACACUUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 109915 0.72 0.985736
Target:  5'- aACCCUUUAAgACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 23464 0.72 0.985736
Target:  5'- aGCCCUUUAACACCUAAuCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUuGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 110910 0.72 0.989018
Target:  5'- aACCCUUUuAUACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAuUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 41207 0.73 0.971362
Target:  5'- uAUUCUUUAGCACCUAAGCUauaugugaGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG--------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 10640 0.73 0.981752
Target:  5'- uACCCUUUAAUACgUAAGCCGUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGgAUUUGGUA----------CAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.