miRNA display CGI


Results 101 - 120 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 12541 0.73 0.976985
Target:  5'- aACCCUUUAAUACCUAAAUUAUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50709 0.73 0.974285
Target:  5'- uAUCCUUUAACACCUAAACUAg--AUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUacaUAU- -5'
28276 3' -46.5 NC_005902.1 + 96248 0.73 0.974285
Target:  5'- uACCCUUUAACACCUAAGuuAUaUAUGc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 8663 0.73 0.971362
Target:  5'- aACCUUUUAACACCUAAACUAUu---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 41207 0.73 0.971362
Target:  5'- uAUUCUUUAGCACCUAAGCUauaugugaGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG--------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 97688 0.73 0.981752
Target:  5'- aACCCUUUAACACCUAAGuuAUauacaaacaaGUGUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 158099 0.73 0.981752
Target:  5'- uAUCUUUUAACACCUAAGCUAUauaaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA-----CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 10640 0.73 0.981752
Target:  5'- uACCCUUUAAUACgUAAGCCGUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGgAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 1144 0.73 0.974285
Target:  5'- aACCCUUUAAgACCUAAGCU--GUAUAc -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 99862 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 162645 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 131315 0.74 0.964814
Target:  5'- aACCCUUUAAUACUUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 39095 0.74 0.961173
Target:  5'- aACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 21167 0.74 0.961173
Target:  5'- uCCCUUUAACACUUAAGCUAUaUAUGa -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 137495 0.74 0.9662
Target:  5'- aACCCUUUAAUACCUAAauuauaugaacaaguACCAUGa--- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------------UGGUACauau -5'
28276 3' -46.5 NC_005902.1 + 61522 0.74 0.964814
Target:  5'- aACCCUUUAAUACUUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 162389 0.74 0.964814
Target:  5'- uCCCUUUAACACCUAAGCUAc----- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUacauau -5'
28276 3' -46.5 NC_005902.1 + 52578 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 80733 0.74 0.961173
Target:  5'- aACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 142153 0.74 0.961173
Target:  5'- cACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.