Results 61 - 80 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 169441 | 0.76 | 0.916526 |
Target: 5'- aACCCUUUAACACUUAAGCU--GUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGuaCAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 40966 | 0.76 | 0.903604 |
Target: 5'- cACCCUUUAAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 85905 | 0.75 | 0.948714 |
Target: 5'- cCCCUUUAACAUCUAAGCUAUaUAUGa -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 48821 | 0.75 | 0.948714 |
Target: 5'- aACCUUUUAACACCUAAACUAUaUAUu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114649 | 0.75 | 0.944032 |
Target: 5'- aAUCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 144402 | 0.75 | 0.944032 |
Target: 5'- aACCCUUUAACAUCUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 23718 | 0.75 | 0.933853 |
Target: 5'- aACCCUUUAACACUUAAGCUAUauacaacugaGUAUGu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 29822 | 0.75 | 0.948714 |
Target: 5'- aACCUUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 86266 | 0.75 | 0.948714 |
Target: 5'- cCCCUUUAACAUCUAAGCUAUaUAUGa -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 50361 | 0.75 | 0.948714 |
Target: 5'- aACUCUUUAACAUUUAAGCUAUGUAc- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 85339 | 0.75 | 0.944032 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 143017 | 0.75 | 0.944032 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 145944 | 0.75 | 0.944032 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 45077 | 0.75 | 0.953129 |
Target: 5'- uACCUUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 50818 | 0.75 | 0.944032 |
Target: 5'- aACCCUUUAACAUCUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 146425 | 0.75 | 0.944032 |
Target: 5'- aAUCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 16875 | 0.75 | 0.948714 |
Target: 5'- uAUCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 105941 | 0.75 | 0.948714 |
Target: 5'- aACCUUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 172604 | 0.75 | 0.948714 |
Target: 5'- aACCCUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 166191 | 0.75 | 0.953129 |
Target: 5'- aACCCUUUAACACaUAAGCCAuauacaaacaagUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGgAUUUGGU------------ACAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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