miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 150156 0.76 0.928353
Target:  5'- aACCCUUUAACACCUAAGgUGUGg--- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUgGUACauau -5'
28276 3' -46.5 NC_005902.1 + 55062 0.76 0.928353
Target:  5'- uACCCUUUAACACCUAAguucACU-UGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU----UGGuACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 23718 0.75 0.933853
Target:  5'- aACCCUUUAACACUUAAGCUAUauacaacugaGUAUGu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 144402 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 114649 0.75 0.944032
Target:  5'- aAUCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 146425 0.75 0.944032
Target:  5'- aAUCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 50818 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 85339 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 143017 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 145944 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29822 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 172604 0.75 0.948714
Target:  5'- aACCCUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 85905 0.75 0.948714
Target:  5'- cCCCUUUAACAUCUAAGCUAUaUAUGa -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 16875 0.75 0.948714
Target:  5'- uAUCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 105941 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 48821 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAACUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 86266 0.75 0.948714
Target:  5'- cCCCUUUAACAUCUAAGCUAUaUAUGa -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50361 0.75 0.948714
Target:  5'- aACUCUUUAACAUUUAAGCUAUGUAc- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 45077 0.75 0.953129
Target:  5'- uACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 166191 0.75 0.953129
Target:  5'- aACCCUUUAACACaUAAGCCAuauacaaacaagUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGgAUUUGGU------------ACAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.