miRNA display CGI


Results 81 - 100 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 67959 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 68320 0.67 0.999785
Target:  5'- uACCCUCUAcCACCUAAGuuAUa---- -3'
miRNA:   3'- -UGGGAGAUuGUGGAUUUggUAcauau -5'
28276 3' -46.5 NC_005902.1 + 68523 0.77 0.896738
Target:  5'- aACCCUUUAACAUCUAAGCUAUaugcaaguaaGUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 68932 0.69 0.998943
Target:  5'- uACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 69309 0.72 0.989018
Target:  5'- aACCCUUUAACACCUAggUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuuGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 71207 0.66 0.99997
Target:  5'- aACCUUUUAAUGCUUAAGCUAuauacacucguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 71707 0.76 0.910201
Target:  5'- cCCCUUUAACACCUAGGCUAUa---- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 75023 0.78 0.850153
Target:  5'- aACCUUUUAACACCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 75082 0.67 0.999834
Target:  5'- aACCCUUUAACuCCUAAugCGuUGUu-- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUugGU-ACAuau -5'
28276 3' -46.5 NC_005902.1 + 75821 0.8 0.785657
Target:  5'- uACCCUUUAACACCUAAauuauauauACCGuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGU--ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76065 0.78 0.850153
Target:  5'- aACCCUUUAAUACCUGAACUAUauacaaacgaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76457 0.71 0.993218
Target:  5'- cACCCUUUAACACCUAAguuauauauuuagucACUAcacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76654 0.71 0.99168
Target:  5'- uACCCUUUAACAUCUAAguuuGCUAUGcuUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU----UGGUAC--AUAU- -5'
28276 3' -46.5 NC_005902.1 + 76894 0.78 0.832726
Target:  5'- uACCCUUUAACACUUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 78452 0.7 0.997266
Target:  5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 80733 0.74 0.961173
Target:  5'- aACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 80988 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 83987 0.7 0.9964
Target:  5'- aACCCUUUAACACUUAAgugauauacucacucACCAcauuuguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 84885 0.67 0.999834
Target:  5'- aGCUCUUUAACAUCUAAaauuauAUgAUGUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU------UGgUACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 84931 0.68 0.999557
Target:  5'- cACCCUUUAACACUUAAGCaa--UAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGguacAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.