Results 101 - 120 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 85339 | 0.75 | 0.944032 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 85583 | 0.74 | 0.968207 |
Target: 5'- uACCCUUUAAUAUCUAAGCUAuauaugcuuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 85905 | 0.75 | 0.948714 |
Target: 5'- cCCCUUUAACAUCUAAGCUAUaUAUGa -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 86266 | 0.75 | 0.948714 |
Target: 5'- cCCCUUUAACAUCUAAGCUAUaUAUGa -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 87314 | 0.73 | 0.979232 |
Target: 5'- aACCCUUUAACcCCUAAGCUAUauaaugaGUAUAg -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUA-------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 90568 | 0.7 | 0.996151 |
Target: 5'- gGCCCccaacguauUUUGAaACCUAAACCGUGUAa- -3' miRNA: 3'- -UGGG---------AGAUUgUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 90846 | 0.73 | 0.976985 |
Target: 5'- aAUCCUUUAACACCUAAAUUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 91307 | 0.69 | 0.998943 |
Target: 5'- uACCUUUUAACACUUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 91554 | 0.67 | 0.999872 |
Target: 5'- aACaaUCuUAAUACCUAAGCUAUGUAc- -3' miRNA: 3'- -UGggAG-AUUGUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 91856 | 0.81 | 0.734626 |
Target: 5'- aACCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 91998 | 0.69 | 0.998099 |
Target: 5'- uGCCCUUUAACuuuuuaaauACCUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUG---------UGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 92264 | 0.66 | 0.999926 |
Target: 5'- uACUUUUUaAACAUCUAAGCUAUGUAc- -3' miRNA: 3'- -UGGGAGA-UUGUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 95762 | 0.69 | 0.998943 |
Target: 5'- uACCUUUUAACACUUAAGCUAUaUAUu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 95871 | 0.7 | 0.997453 |
Target: 5'- aACCCUCUAACuCCUAAGgCAuuaucaacaacacuuUGUGUc -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUgGU---------------ACAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 96248 | 0.73 | 0.974285 |
Target: 5'- uACCCUUUAACACCUAAGuuAUaUAUGc -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUggUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 97174 | 0.84 | 0.571621 |
Target: 5'- aACCCUUUAACACCUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 97435 | 0.8 | 0.745083 |
Target: 5'- uACCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 97688 | 0.73 | 0.981752 |
Target: 5'- aACCCUUUAACACCUAAGuuAUauacaaacaaGUGUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUggUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 99555 | 0.81 | 0.734626 |
Target: 5'- aACCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 99862 | 0.74 | 0.964814 |
Target: 5'- uACUCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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