Results 121 - 140 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 101071 | 0.71 | 0.994688 |
Target: 5'- aACCCUUUAACAUCUAcACUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUuUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 104328 | 0.87 | 0.399706 |
Target: 5'- aACCCUUUAACAUCUAAGCCAUGaGUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUACaUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 104415 | 0.77 | 0.896738 |
Target: 5'- uCCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 105081 | 0.7 | 0.996748 |
Target: 5'- aACCCUUUAAUACCUAccuaAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAU----UUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 105941 | 0.75 | 0.948714 |
Target: 5'- aACCUUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 108856 | 0.72 | 0.990421 |
Target: 5'- aACCCUUcAACACCUAAAUUAUaUAUAa -3' miRNA: 3'- -UGGGAGaUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 109915 | 0.72 | 0.985736 |
Target: 5'- aACCCUUUAAgACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUgUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 110167 | 0.72 | 0.985736 |
Target: 5'- aACCCUUUAAgACCUAAGCUAUaUAUu -3' miRNA: 3'- -UGGGAGAUUgUGGAUUUGGUAcAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 110350 | 0.71 | 0.994688 |
Target: 5'- uAUCCUUUAAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 110910 | 0.72 | 0.989018 |
Target: 5'- aACCCUUUuAUACCUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAuUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 112069 | 0.84 | 0.582485 |
Target: 5'- uACCCUUUAACACCUAAAUCAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 113783 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAaCUAAGCUAUaUAUAc -3' miRNA: 3'- -UGGGAGAUUGUgGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114034 | 0.69 | 0.999141 |
Target: 5'- aAUCCgUUAACACCUAAACUAUaUAUAc -3' miRNA: 3'- -UGGGaGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114355 | 0.66 | 0.99997 |
Target: 5'- --aUUCUAACACCUAAGCUAUa---- -3' miRNA: 3'- uggGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114596 | 0.69 | 0.998428 |
Target: 5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114649 | 0.75 | 0.944032 |
Target: 5'- aAUCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114810 | 0.69 | 0.998943 |
Target: 5'- uACCCUUUAACACUUAggUUAuauauguuuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUuuGGU------------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 116630 | 0.7 | 0.995468 |
Target: 5'- aACUUUUUAACACCUAAGCUAUauacaagugaGUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 116881 | 0.71 | 0.993803 |
Target: 5'- uACCgUUUAACACCUAAACUAUa---- -3' miRNA: 3'- -UGGgAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 117070 | 0.79 | 0.795431 |
Target: 5'- aACCCUUUAACAUCUAAGCUauaugaacagGUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGG----------UACAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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