miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 127944 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 127635 0.68 0.999444
Target:  5'- aACCCUUUAAgACUUAAGCUGUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 125786 0.84 0.539352
Target:  5'- aACCCUUUAACACCUAAGCUauauauaaacaaGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 123016 0.7 0.996151
Target:  5'- uACCCUUUAACcCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 117070 0.79 0.795431
Target:  5'- aACCCUUUAACAUCUAAGCUauaugaacagGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG----------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 116881 0.71 0.993803
Target:  5'- uACCgUUUAACACCUAAACUAUa---- -3'
miRNA:   3'- -UGGgAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 116630 0.7 0.995468
Target:  5'- aACUUUUUAACACCUAAGCUAUauacaagugaGUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 114810 0.69 0.998943
Target:  5'- uACCCUUUAACACUUAggUUAuauauguuuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuuGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 114649 0.75 0.944032
Target:  5'- aAUCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 114596 0.69 0.998428
Target:  5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 114355 0.66 0.99997
Target:  5'- --aUUCUAACACCUAAGCUAUa---- -3'
miRNA:   3'- uggGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 114034 0.69 0.999141
Target:  5'- aAUCCgUUAACACCUAAACUAUaUAUAc -3'
miRNA:   3'- -UGGGaGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 113783 0.69 0.998099
Target:  5'- uACCCUUUAACAaCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUgGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 112069 0.84 0.582485
Target:  5'- uACCCUUUAACACCUAAAUCAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 110910 0.72 0.989018
Target:  5'- aACCCUUUuAUACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAuUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 110350 0.71 0.994688
Target:  5'- uAUCCUUUAAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 110167 0.72 0.985736
Target:  5'- aACCCUUUAAgACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 109915 0.72 0.985736
Target:  5'- aACCCUUUAAgACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 108856 0.72 0.990421
Target:  5'- aACCCUUcAACACCUAAAUUAUaUAUAa -3'
miRNA:   3'- -UGGGAGaUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 105941 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.