miRNA display CGI


Results 81 - 100 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 105081 0.7 0.996748
Target:  5'- aACCCUUUAAUACCUAccuaAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAU----UUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 104415 0.77 0.896738
Target:  5'- uCCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 104328 0.87 0.399706
Target:  5'- aACCCUUUAACAUCUAAGCCAUGaGUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACaUAU- -5'
28276 3' -46.5 NC_005902.1 + 101071 0.71 0.994688
Target:  5'- aACCCUUUAACAUCUAcACUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 99862 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 99555 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 97688 0.73 0.981752
Target:  5'- aACCCUUUAACACCUAAGuuAUauacaaacaaGUGUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 97435 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 97174 0.84 0.571621
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 96248 0.73 0.974285
Target:  5'- uACCCUUUAACACCUAAGuuAUaUAUGc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 95871 0.7 0.997453
Target:  5'- aACCCUCUAACuCCUAAGgCAuuaucaacaacacuuUGUGUc -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUgGU---------------ACAUAu -5'
28276 3' -46.5 NC_005902.1 + 95762 0.69 0.998943
Target:  5'- uACCUUUUAACACUUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 92264 0.66 0.999926
Target:  5'- uACUUUUUaAACAUCUAAGCUAUGUAc- -3'
miRNA:   3'- -UGGGAGA-UUGUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 91998 0.69 0.998099
Target:  5'- uGCCCUUUAACuuuuuaaauACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUG---------UGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 91856 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 91554 0.67 0.999872
Target:  5'- aACaaUCuUAAUACCUAAGCUAUGUAc- -3'
miRNA:   3'- -UGggAG-AUUGUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 91307 0.69 0.998943
Target:  5'- uACCUUUUAACACUUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 90846 0.73 0.976985
Target:  5'- aAUCCUUUAACACCUAAAUUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 90568 0.7 0.996151
Target:  5'- gGCCCccaacguauUUUGAaACCUAAACCGUGUAa- -3'
miRNA:   3'- -UGGG---------AGAUUgUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 87314 0.73 0.979232
Target:  5'- aACCCUUUAACcCCUAAGCUAUauaaugaGUAUAg -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUA-------CAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.