miRNA display CGI


Results 81 - 100 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 1144 0.73 0.974285
Target:  5'- aACCCUUUAAgACCUAAGCU--GUAUAc -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 137772 0.72 0.98746
Target:  5'- aACUUUUUAACACCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76654 0.71 0.99168
Target:  5'- uACCCUUUAACAUCUAAguuuGCUAUGcuUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU----UGGUAC--AUAU- -5'
28276 3' -46.5 NC_005902.1 + 36160 0.71 0.994688
Target:  5'- aACCCuUUUAACAUCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 136044 0.7 0.995468
Target:  5'- aACCCUUUAACuCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29449 0.7 0.997714
Target:  5'- aACCCUUUAACACCcAAAUUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGaUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 147589 0.76 0.928353
Target:  5'- aAUCCUgUAACACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAgAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 23255 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 40966 0.76 0.903604
Target:  5'- cACCCUUUAAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 141993 0.67 0.999834
Target:  5'- aACUCUUUAACAUUUAAGCUauauacaaaugcGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 28789 0.66 0.999945
Target:  5'- uAUCCUUUAACAUCUGuGCUcuuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuUGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 170531 0.78 0.850153
Target:  5'- aACCUUUUAACACCUAAACUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 7599 0.79 0.81446
Target:  5'- cACCCUUUAACACCUAAAUUAuauacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU----------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 128771 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 47234 0.83 0.601045
Target:  5'- aACCCUUUAACACCUAAGCUAuauacacacuccuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU--------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 78452 0.7 0.997266
Target:  5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 143891 0.7 0.997266
Target:  5'- cACCCUUUAACAUCUAAAUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 52578 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 41207 0.73 0.971362
Target:  5'- uAUUCUUUAGCACCUAAGCUauaugugaGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG--------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 85583 0.74 0.968207
Target:  5'- uACCCUUUAAUAUCUAAGCUAuauaugcuuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.