Results 101 - 120 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 134644 | 0.81 | 0.702686 |
Target: 5'- aACCCUUUAAUACCUAAGCUGUGaAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUACaUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 104328 | 0.87 | 0.399706 |
Target: 5'- aACCCUUUAACAUCUAAGCCAUGaGUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUACaUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 1516 | 0.68 | 0.999557 |
Target: 5'- cACCUUaggaauuaaucCUAACACCUGAGCUAUaUAUAc -3' miRNA: 3'- -UGGGA-----------GAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 87314 | 0.73 | 0.979232 |
Target: 5'- aACCCUUUAACcCCUAAGCUAUauaaugaGUAUAg -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUA-------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 90846 | 0.73 | 0.976985 |
Target: 5'- aAUCCUUUAACACCUAAAUUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 50709 | 0.73 | 0.974285 |
Target: 5'- uAUCCUUUAACACCUAAACUAg--AUAc -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUacaUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 96248 | 0.73 | 0.974285 |
Target: 5'- uACCCUUUAACACCUAAGuuAUaUAUGc -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUggUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 8663 | 0.73 | 0.971362 |
Target: 5'- aACCUUUUAACACCUAAACUAUu---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 41207 | 0.73 | 0.971362 |
Target: 5'- uAUUCUUUAGCACCUAAGCUauaugugaGUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGG--------UACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 131315 | 0.74 | 0.964814 |
Target: 5'- aACCCUUUAAUACUUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 52578 | 0.74 | 0.964814 |
Target: 5'- uACUCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 10640 | 0.73 | 0.981752 |
Target: 5'- uACCCUUUAAUACgUAAGCCGUauacaaacaaGUGUAg -3' miRNA: 3'- -UGGGAGAUUGUGgAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 85583 | 0.74 | 0.968207 |
Target: 5'- uACCCUUUAAUAUCUAAGCUAuauaugcuuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 143891 | 0.7 | 0.997266 |
Target: 5'- cACCCUUUAACAUCUAAAUUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 78452 | 0.7 | 0.997266 |
Target: 5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 97688 | 0.73 | 0.981752 |
Target: 5'- aACCCUUUAACACCUAAGuuAUauacaaacaaGUGUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUggUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 127944 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 51674 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 156643 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 142336 | 0.68 | 0.999557 |
Target: 5'- uACUCUUUAACACCUAAAgCAUc---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUgGUAcauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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