miRNA display CGI


Results 121 - 140 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 29024 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 17129 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 80988 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 20365 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29346 0.8 0.765643
Target:  5'- aACCCUUUAAUACCUAAACUAUaUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 117070 0.79 0.795431
Target:  5'- aACCCUUUAACAUCUAAGCUauaugaacagGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG----------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50440 0.79 0.823693
Target:  5'- aGCUCUUUAACACCUAAGCUAUaUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 52578 0.74 0.964814
Target:  5'- uACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 1391 0.82 0.670129
Target:  5'- aACCCUUUAACACCUAAGCU--GUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 13437 0.84 0.582485
Target:  5'- uACCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 114596 0.69 0.998428
Target:  5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 162274 0.69 0.998099
Target:  5'- aAUCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 51674 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 127944 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 156643 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 78452 0.7 0.997266
Target:  5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 143891 0.7 0.997266
Target:  5'- cACCCUUUAACAUCUAAAUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 104328 0.87 0.399706
Target:  5'- aACCCUUUAACAUCUAAGCCAUGaGUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACaUAU- -5'
28276 3' -46.5 NC_005902.1 + 125786 0.84 0.539352
Target:  5'- aACCCUUUAACACCUAAGCUauauauaaacaaGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 110167 0.72 0.985736
Target:  5'- aACCCUUUAAgACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGUAcAUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.