Results 41 - 60 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 169363 | 0.66 | 0.999926 |
Target: 5'- -aCUUUUAACAUCUAAGCUAUGa--- -3' miRNA: 3'- ugGGAGAUUGUGGAUUUGGUACauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 6442 | 0.66 | 0.999926 |
Target: 5'- aACCCUUUAACAaCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUgGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 131366 | 0.66 | 0.999926 |
Target: 5'- aACCCUU-AAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGaUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 131124 | 0.66 | 0.999926 |
Target: 5'- uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAUAu -3' miRNA: 3'- -UGGGAGAUUguGGAUUUGG----------UACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 92264 | 0.66 | 0.999926 |
Target: 5'- uACUUUUUaAACAUCUAAGCUAUGUAc- -3' miRNA: 3'- -UGGGAGA-UUGUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 142336 | 0.68 | 0.999557 |
Target: 5'- uACUCUUUAACACCUAAAgCAUc---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUgGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 23499 | 0.68 | 0.999557 |
Target: 5'- uCCCUUUAACAUUUAAGCUAUaugcaaGUGUGa -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUA------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 156643 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 127944 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 51674 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 162274 | 0.69 | 0.998099 |
Target: 5'- aAUCCUUUAACAUCUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114596 | 0.69 | 0.998428 |
Target: 5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 149453 | 0.69 | 0.998707 |
Target: 5'- aACCUUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 67959 | 0.69 | 0.998707 |
Target: 5'- aACCUUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 67604 | 0.69 | 0.998707 |
Target: 5'- aACCUUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 26512 | 0.69 | 0.998707 |
Target: 5'- aAUCUUUUAAUACCUAAGCUAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114034 | 0.69 | 0.999141 |
Target: 5'- aAUCCgUUAACACCUAAACUAUaUAUAc -3' miRNA: 3'- -UGGGaGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 174846 | 0.68 | 0.999307 |
Target: 5'- cACUCUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 148484 | 0.68 | 0.999392 |
Target: 5'- uAUCUUUUAACACCUAAGCUugcuaugcuuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGu------------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 127635 | 0.68 | 0.999444 |
Target: 5'- aACCCUUUAAgACUUAAGCUGUaUAUAa -3' miRNA: 3'- -UGGGAGAUUgUGGAUUUGGUAcAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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