Results 61 - 80 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 114034 | 0.69 | 0.999141 |
Target: 5'- aAUCCgUUAACACCUAAACUAUaUAUAc -3' miRNA: 3'- -UGGGaGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 26512 | 0.69 | 0.998707 |
Target: 5'- aAUCUUUUAAUACCUAAGCUAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 105081 | 0.7 | 0.996748 |
Target: 5'- aACCCUUUAAUACCUAccuaAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAU----UUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 83987 | 0.7 | 0.9964 |
Target: 5'- aACCCUUUAACACUUAAgugauauacucacucACCAcauuuguuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 90568 | 0.7 | 0.996151 |
Target: 5'- gGCCCccaacguauUUUGAaACCUAAACCGUGUAa- -3' miRNA: 3'- -UGGG---------AGAUUgUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 67244 | 0.7 | 0.996151 |
Target: 5'- uACCCUUUAACuCCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 123016 | 0.7 | 0.996151 |
Target: 5'- uACCCUUUAACcCCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 136300 | 0.7 | 0.996151 |
Target: 5'- uACCCUUUAACuCCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 26745 | 0.7 | 0.995468 |
Target: 5'- aACCCUUUAACAUUUAAGCUAU-UAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 110350 | 0.71 | 0.994688 |
Target: 5'- uAUCCUUUAAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 143891 | 0.7 | 0.997266 |
Target: 5'- cACCCUUUAACAUCUAAAUUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 78452 | 0.7 | 0.997266 |
Target: 5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 67604 | 0.69 | 0.998707 |
Target: 5'- aACCUUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 67959 | 0.69 | 0.998707 |
Target: 5'- aACCUUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 149453 | 0.69 | 0.998707 |
Target: 5'- aACCUUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114596 | 0.69 | 0.998428 |
Target: 5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 162274 | 0.69 | 0.998099 |
Target: 5'- aAUCCUUUAACAUCUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 51674 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 127944 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 156643 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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