Results 81 - 100 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 76457 | 0.71 | 0.993218 |
Target: 5'- cACCCUUUAACACCUAAguuauauauuuagucACUAcacucauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 52418 | 0.71 | 0.992145 |
Target: 5'- cACCCUUUAACACCUAAgugauauaccuguuuGCUuAUGUAc- -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------------UGG-UACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 61863 | 0.72 | 0.990421 |
Target: 5'- aACUCUUUAACAUCUAAGCUAuacucaaucauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 69309 | 0.72 | 0.989018 |
Target: 5'- aACCCUUUAACACCUAggUUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUuuGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 37500 | 0.72 | 0.985736 |
Target: 5'- uAUCCUUUAACACUUAAGCUauaugaacggguAUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 110167 | 0.72 | 0.985736 |
Target: 5'- aACCCUUUAAgACCUAAGCUAUaUAUu -3' miRNA: 3'- -UGGGAGAUUgUGGAUUUGGUAcAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 29705 | 0.72 | 0.985736 |
Target: 5'- uACCCuUUUAACACCUAAGCUAUaUAUu -3' miRNA: 3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 110350 | 0.71 | 0.994688 |
Target: 5'- uAUCCUUUAAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 26745 | 0.7 | 0.995468 |
Target: 5'- aACCCUUUAACAUUUAAGCUAU-UAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 136300 | 0.7 | 0.996151 |
Target: 5'- uACCCUUUAACuCCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 127944 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAACUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 156643 | 0.69 | 0.998099 |
Target: 5'- uACCCUUUAACAUUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 78452 | 0.7 | 0.997266 |
Target: 5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 143891 | 0.7 | 0.997266 |
Target: 5'- cACCCUUUAACAUCUAAAUUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 105081 | 0.7 | 0.996748 |
Target: 5'- aACCCUUUAAUACCUAccuaAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAU----UUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 83987 | 0.7 | 0.9964 |
Target: 5'- aACCCUUUAACACUUAAgugauauacucacucACCAcauuuguuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUU---------------UGGU--------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 90568 | 0.7 | 0.996151 |
Target: 5'- gGCCCccaacguauUUUGAaACCUAAACCGUGUAa- -3' miRNA: 3'- -UGGG---------AGAUUgUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 67244 | 0.7 | 0.996151 |
Target: 5'- uACCCUUUAACuCCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 123016 | 0.7 | 0.996151 |
Target: 5'- uACCCUUUAACcCCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 5632 | 0.72 | 0.984618 |
Target: 5'- aAUUCUUUAACACCUAAGCUuauaugaacaagcauGUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGG---------------UACAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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