miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 21308 0.69 0.998707
Target:  5'- uACCUUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 149453 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 67959 0.69 0.998707
Target:  5'- aACCUUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 26512 0.69 0.998707
Target:  5'- aAUCUUUUAAUACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 177324 0.69 0.998428
Target:  5'- uAUCCUUUAACACCUAAGUUuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 137432 0.69 0.998428
Target:  5'- cACCUUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 114596 0.69 0.998428
Target:  5'- aACCCUUUAACACUUAAguuauauauGCUuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 1260 0.69 0.998099
Target:  5'- aACUCUUcAACACCUAGGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGaUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 162274 0.69 0.998099
Target:  5'- aAUCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 113783 0.69 0.998099
Target:  5'- uACCCUUUAACAaCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUgGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 127944 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 156643 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 48109 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 91998 0.69 0.998099
Target:  5'- uGCCCUUUAACuuuuuaaauACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUG---------UGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 51674 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29449 0.7 0.997714
Target:  5'- aACCCUUUAACACCcAAAUUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGaUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 95871 0.7 0.997453
Target:  5'- aACCCUCUAACuCCUAAGgCAuuaucaacaacacuuUGUGUc -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUUgGU---------------ACAUAu -5'
28276 3' -46.5 NC_005902.1 + 143891 0.7 0.997266
Target:  5'- cACCCUUUAACAUCUAAAUUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 78452 0.7 0.997266
Target:  5'- aACUCUUUAACAUCUAAGCUAUauacuuauucGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50103 0.7 0.997266
Target:  5'- aACCCUuugaucCUAACACCUAAGCUAcauacuuacUGUGc- -3'
miRNA:   3'- -UGGGA------GAUUGUGGAUUUGGU---------ACAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.