miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 143775 0.69 1
Target:  5'- -gUUAACUCCUAAGauGUcAUUGaCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUU--CA-UAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 10793 0.69 1
Target:  5'- uUUUAACUUUUAAAGUAUcGUUggUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGuuAc -5'
28277 3' -36.1 NC_005902.1 + 149347 0.69 1
Target:  5'- uUUUAACUCCUAAGGcUAgUA-UAGUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUC-AUaAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 20413 0.69 1
Target:  5'- -gUUAACUCCUAAGGc---AUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 167553 0.7 1
Target:  5'- cCUUUAAUUCCUAAAGc---AUCAuUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 6177 0.7 1
Target:  5'- uCUUUAACUCUUAAGGcAUUAUUu--- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 87007 0.7 1
Target:  5'- cCUUUAAUcCCUAAGGUAUcAUUGAUa -3'
miRNA:   3'- -GAAAUUGaGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 181351 0.7 1
Target:  5'- cCUUUAACUCUcAAAGcAUUA-CAGUGa -3'
miRNA:   3'- -GAAAUUGAGGaUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 47294 0.7 1
Target:  5'- aUUUAACUCauaUcaucauugacaauauGAAGUAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGg--A---------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 143549 0.7 1
Target:  5'- uUUUAACUCCacauc-AUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 7553 0.7 1
Target:  5'- cCUUUAACUCUaaacacauuAGUAUUAUUggUGu -3'
miRNA:   3'- -GAAAUUGAGGauu------UCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 47110 0.7 1
Target:  5'- -gUUAAUUCUUAAGGUAUUAaCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUaGUUac -5'
28277 3' -36.1 NC_005902.1 + 20057 0.7 1
Target:  5'- aUUUAACUCUUAAGaca-UGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUcauaAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 63468 0.7 1
Target:  5'- cCUUUuAUUCUUAAAGUAUcGUUGAUGu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114990 0.7 1
Target:  5'- cCUUUAACUCUacaucgucaccgaUGAcauaacGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUu-----CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 50392 0.7 1
Target:  5'- -------aCCUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gaaauugaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 48047 0.71 1
Target:  5'- --aUAACUCCUAAGGcAUcGUCAGc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 68108 0.71 1
Target:  5'- cCUUUAACUCUa----UAUUAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 163565 0.71 1
Target:  5'- cCUUUAACUCaacaUuaucauugaugacacAAAGUGUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGg---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 149032 0.71 1
Target:  5'- uUUUAAUUUCUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.