Results 61 - 80 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 99004 | 0.71 | 1 |
Target: 5'- uCUUUAACUCUgucauuaaugacaUAAAGcAUUGUUAGUGa -3' miRNA: 3'- -GAAAUUGAGG-------------AUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 88957 | 0.71 | 1 |
Target: 5'- -gUUAAUaCUgUAAGGUAUUAUCAAUGa -3' miRNA: 3'- gaAAUUGaGG-AUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 79481 | 0.71 | 1 |
Target: 5'- cCUUUGACUCUUGAAGUucac-CAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAuaauaGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 42396 | 0.71 | 1 |
Target: 5'- gCUUUAACUCUuccaugcauUAAGGauguauuaaUAUUGUCAAUGa -3' miRNA: 3'- -GAAAUUGAGG---------AUUUC---------AUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 25429 | 0.71 | 1 |
Target: 5'- uUUUAACUCa--AGGcGUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGgauUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 138176 | 0.71 | 1 |
Target: 5'- cCUUUAAUUCCUAAGGcAUcAUUAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 166026 | 0.71 | 1 |
Target: 5'- -gUUAACUUCau-GGUGUUAUUGAUGa -3' miRNA: 3'- gaAAUUGAGGauuUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 170985 | 0.71 | 1 |
Target: 5'- -gUUAACUCUgaauGUGUUGUUggUGa -3' miRNA: 3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 76113 | 0.71 | 1 |
Target: 5'- uCUUUAAUUCCaugu-UAUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 5899 | 0.71 | 1 |
Target: 5'- uCUUUAACcCCUAagcuauauacaaauAAGUGUUGUgAAUGa -3' miRNA: 3'- -GAAAUUGaGGAU--------------UUCAUAAUAgUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 163565 | 0.71 | 1 |
Target: 5'- cCUUUAACUCaacaUuaucauugaugacacAAAGUGUUAUUAAUGa -3' miRNA: 3'- -GAAAUUGAGg---A---------------UUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 48047 | 0.71 | 1 |
Target: 5'- --aUAACUCCUAAGGcAUcGUCAGc- -3' miRNA: 3'- gaaAUUGAGGAUUUCaUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 68108 | 0.71 | 1 |
Target: 5'- cCUUUAACUCUa----UAUUAUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 167209 | 0.72 | 1 |
Target: 5'- -gUUAACUCCUAAGGcAUUGUUu--- -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 72062 | 0.72 | 1 |
Target: 5'- cCUUUAAaUCUUuAGGUAUUAUCGAUa -3' miRNA: 3'- -GAAAUUgAGGAuUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 28879 | 0.72 | 1 |
Target: 5'- -aUUAAUUCCUAGGGcAUcagcacUGUCAGUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUA------AUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 78735 | 0.72 | 1 |
Target: 5'- -cUUAACUCCUAAAGcGUUGaCAAc- -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUaGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 172666 | 0.72 | 1 |
Target: 5'- -gUUAACUCUagaUuaucauuaaugauguGAAGUGUUGUCAAUGa -3' miRNA: 3'- gaAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 80299 | 0.73 | 1 |
Target: 5'- uUUUuACUCCUGAGGUA--GUUGAUGc -3' miRNA: 3'- gAAAuUGAGGAUUUCAUaaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 26209 | 0.73 | 1 |
Target: 5'- -cUUAACUCCUAAGGcaucAUUGaCGAUGg -3' miRNA: 3'- gaAAUUGAGGAUUUCa---UAAUaGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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