Results 81 - 100 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 45257 | 0.73 | 1 |
Target: 5'- cCUUUAACUCCacac--AUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 134459 | 0.73 | 1 |
Target: 5'- -gUUAACUCUUAAAGcAUUGUUGAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 137787 | 0.73 | 1 |
Target: 5'- uUUUAGCUCCUAuGGcAUUAUUGAUa -3' miRNA: 3'- gAAAUUGAGGAUuUCaUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 139818 | 0.73 | 1 |
Target: 5'- uUUUAACUCCa----UGUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 79327 | 0.73 | 1 |
Target: 5'- cCUUUGACUCUUAAAaUGcUAUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUcAUaAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 93489 | 0.73 | 1 |
Target: 5'- cCUUUAACUCUacau-UAUUGUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 26209 | 0.73 | 1 |
Target: 5'- -cUUAACUCCUAAGGcaucAUUGaCGAUGg -3' miRNA: 3'- gaAAUUGAGGAUUUCa---UAAUaGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 83800 | 0.73 | 1 |
Target: 5'- -gUUAACUCCUAAGGcAUUAaUGAUGu -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUaGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 142333 | 0.73 | 1 |
Target: 5'- uCUUUAACaCCUAAAGcAUcAUCGAUGa -3' miRNA: 3'- -GAAAUUGaGGAUUUCaUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 123082 | 0.73 | 1 |
Target: 5'- cCUUUAAUUCCUAAGGcAUcAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 10733 | 0.73 | 1 |
Target: 5'- cCUUUAACUCUUAAGaUGUUGUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 99909 | 0.74 | 1 |
Target: 5'- cCUUUAAUUCCUAAGGcGUcAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 95372 | 0.74 | 1 |
Target: 5'- uUUUAAUUUCUAAGGUGcUAUCAAc- -3' miRNA: 3'- gAAAUUGAGGAUUUCAUaAUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 40738 | 0.74 | 1 |
Target: 5'- uUUUAACUCCaugc-UAUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 81171 | 0.74 | 1 |
Target: 5'- cCUUUAACUCUUAAAaUAUUGUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 61760 | 0.74 | 1 |
Target: 5'- ----cACUCCUAAGGcAUUGUCAAc- -3' miRNA: 3'- gaaauUGAGGAUUUCaUAAUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 16307 | 0.74 | 1 |
Target: 5'- -aUUAACUCCUAAGGcaucauUAUUAaCAAUGc -3' miRNA: 3'- gaAAUUGAGGAUUUC------AUAAUaGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 16179 | 0.75 | 1 |
Target: 5'- cCUUUAACUCCacaUcaucaacgacaauguAGAGUGUUAUUAAUGa -3' miRNA: 3'- -GAAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 11424 | 0.75 | 1 |
Target: 5'- -cUUAACUCUUAAGGcAUcAUCAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 130812 | 0.75 | 1 |
Target: 5'- cCUUUAACUUCUAAGGcGUcAUCGAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home